miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 5' -58.1 NC_006560.1 + 99746 0.66 0.870832
Target:  5'- -gGGGCCCcgacgacgcccggguGGGGGGgcgCGuacgccGCCGggGCc -3'
miRNA:   3'- cgCCUGGG---------------CCCUCUa--GCu-----CGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 9617 0.66 0.867955
Target:  5'- cGCGGcCCCuGGGGc-CGcGCCGAAGg -3'
miRNA:   3'- -CGCCuGGGcCCUCuaGCuCGGCUUCg -5'
31025 5' -58.1 NC_006560.1 + 132111 0.66 0.867955
Target:  5'- gGCGGGCCggaCGGcGGGUCGGucGCCGu-GCc -3'
miRNA:   3'- -CGCCUGG---GCCcUCUAGCU--CGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 147393 0.66 0.867955
Target:  5'- gGCGGAg--GGGAGcgCGGGCgGcAGCa -3'
miRNA:   3'- -CGCCUgggCCCUCuaGCUCGgCuUCG- -5'
31025 5' -58.1 NC_006560.1 + 11474 0.66 0.867955
Target:  5'- cGCGuGGCCgucagcucguacCGGGAGGccUCGGgcGCCGggGa -3'
miRNA:   3'- -CGC-CUGG------------GCCCUCU--AGCU--CGGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 45776 0.66 0.867955
Target:  5'- gGgGGGCgCGGGcucGGUCc-GCCGggGCc -3'
miRNA:   3'- -CgCCUGgGCCCu--CUAGcuCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 78049 0.66 0.867955
Target:  5'- cGCGcGGCCCcGGAGcuggCG-GCCGGcGGCg -3'
miRNA:   3'- -CGC-CUGGGcCCUCua--GCuCGGCU-UCG- -5'
31025 5' -58.1 NC_006560.1 + 149345 0.66 0.867955
Target:  5'- gGCGGcuccuccccGCCgCGGG-GAg-GAGCCGGgcGGCg -3'
miRNA:   3'- -CGCC---------UGG-GCCCuCUagCUCGGCU--UCG- -5'
31025 5' -58.1 NC_006560.1 + 28338 0.66 0.865776
Target:  5'- gGCGGcgccGCCCGGcuccuccccgcggcGGGGagGAGCCGccGCc -3'
miRNA:   3'- -CGCC----UGGGCC--------------CUCUagCUCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 35689 0.66 0.860622
Target:  5'- gGgGGAgCCGGGGGGgagCGAGa--AAGCg -3'
miRNA:   3'- -CgCCUgGGCCCUCUa--GCUCggcUUCG- -5'
31025 5' -58.1 NC_006560.1 + 69988 0.66 0.860622
Target:  5'- uGCuGGAgCCGGGGGc-CGAcGCCGccGCc -3'
miRNA:   3'- -CG-CCUgGGCCCUCuaGCU-CGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 143688 0.66 0.860622
Target:  5'- aGCaGGCagGGGAGGgggCGGGaCGAGGCg -3'
miRNA:   3'- -CGcCUGggCCCUCUa--GCUCgGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 11979 0.66 0.860622
Target:  5'- gGCGGGgcUCUGGGuccugcGGGUCGAGCgGcacaGGGCg -3'
miRNA:   3'- -CGCCU--GGGCCC------UCUAGCUCGgC----UUCG- -5'
31025 5' -58.1 NC_006560.1 + 26942 0.66 0.860622
Target:  5'- cGCGGGgCCGcGGAGGcCGgggaaccccacAGgCGggGCg -3'
miRNA:   3'- -CGCCUgGGC-CCUCUaGC-----------UCgGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 122084 0.66 0.860622
Target:  5'- gGCGGcccaCCGGGAGuUgGAGgCGcGGCu -3'
miRNA:   3'- -CGCCug--GGCCCUCuAgCUCgGCuUCG- -5'
31025 5' -58.1 NC_006560.1 + 124764 0.66 0.860622
Target:  5'- cCGcGACgCCGaGGGGggCGAGgCCGGgcGGCg -3'
miRNA:   3'- cGC-CUG-GGC-CCUCuaGCUC-GGCU--UCG- -5'
31025 5' -58.1 NC_006560.1 + 39311 0.66 0.860622
Target:  5'- cCGGGCCgGGcGGGGcggUGGGgCGggGCc -3'
miRNA:   3'- cGCCUGGgCC-CUCUa--GCUCgGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 40863 0.66 0.860622
Target:  5'- --cGACCC-GGAGcccCGAGCCGGgcGGCg -3'
miRNA:   3'- cgcCUGGGcCCUCua-GCUCGGCU--UCG- -5'
31025 5' -58.1 NC_006560.1 + 56305 0.66 0.860622
Target:  5'- cGCGGccGCCguagugCGcGGAGAcgUCGGGCCGcuuGCa -3'
miRNA:   3'- -CGCC--UGG------GC-CCUCU--AGCUCGGCuu-CG- -5'
31025 5' -58.1 NC_006560.1 + 32876 0.66 0.860622
Target:  5'- gGCaGGGCCCGGG-GA---GGCCGcggggGGGCg -3'
miRNA:   3'- -CG-CCUGGGCCCuCUagcUCGGC-----UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.