miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 4866 0.66 0.605829
Target:  5'- aGGuUCGCGucgacggcGGCGGCggCGCCGGCgggggccgcgucgcgCUCGg -3'
miRNA:   3'- gCC-AGCGC--------CCGCUG--GCGGCCGa--------------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 18828 0.66 0.604875
Target:  5'- gGGUgCGuCGGGCGGcuCCGCgaGGCcgcgUCUCGc -3'
miRNA:   3'- gCCA-GC-GCCCGCU--GGCGg-CCG----AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 26523 0.66 0.604875
Target:  5'- gGGcCGUGGGCGGgCGCgcgcggGGC-CUCGu -3'
miRNA:   3'- gCCaGCGCCCGCUgGCGg-----CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 81066 0.66 0.604875
Target:  5'- uGGUCGUGGGUGugguCCaCgGGCUgcgcCUCGu -3'
miRNA:   3'- gCCAGCGCCCGCu---GGcGgCCGA----GAGC- -5'
31026 3' -64.2 NC_006560.1 + 21650 0.66 0.604875
Target:  5'- --cUCGaCGGGCGgcGCCGCCGGC-Cg-- -3'
miRNA:   3'- gccAGC-GCCCGC--UGGCGGCCGaGagc -5'
31026 3' -64.2 NC_006560.1 + 21689 0.66 0.604875
Target:  5'- --cUCGaCGGGCGgcGCCGCCGGC-Cg-- -3'
miRNA:   3'- gccAGC-GCCCGC--UGGCGGCCGaGagc -5'
31026 3' -64.2 NC_006560.1 + 99146 0.66 0.604875
Target:  5'- gGGUCGCcggccucgccggGGGCGGCCGUCccgGGCgccgCGc -3'
miRNA:   3'- gCCAGCG------------CCCGCUGGCGG---CCGaga-GC- -5'
31026 3' -64.2 NC_006560.1 + 99947 0.66 0.604875
Target:  5'- aCGGgagggCGCGGGUacgcgGugCGCCGucGCUCgcgUCGg -3'
miRNA:   3'- -GCCa----GCGCCCG-----CugGCGGC--CGAG---AGC- -5'
31026 3' -64.2 NC_006560.1 + 25060 0.66 0.604875
Target:  5'- cCGcG-CGCGaGGCGgccGCCGCCGGCgcgCcCGa -3'
miRNA:   3'- -GC-CaGCGC-CCGC---UGGCGGCCGa--GaGC- -5'
31026 3' -64.2 NC_006560.1 + 56129 0.66 0.599155
Target:  5'- cCGGUCGgGGGCGcuGucguagaccagccuuCCGCCGGC-CgggaCGg -3'
miRNA:   3'- -GCCAGCgCCCGC--U---------------GGCGGCCGaGa---GC- -5'
31026 3' -64.2 NC_006560.1 + 11645 0.66 0.595346
Target:  5'- gCGGUCcggGCGGGCGGgggagUCGCUuccgggGGCUCggCGg -3'
miRNA:   3'- -GCCAG---CGCCCGCU-----GGCGG------CCGAGa-GC- -5'
31026 3' -64.2 NC_006560.1 + 24593 0.66 0.595346
Target:  5'- uGGgcgCGCaGGGCGugCuCCuGCUCUCc -3'
miRNA:   3'- gCCa--GCG-CCCGCugGcGGcCGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 66328 0.66 0.595346
Target:  5'- gGGUUGCcGGUGugCGC-GGC-CUCGu -3'
miRNA:   3'- gCCAGCGcCCGCugGCGgCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 84499 0.66 0.595346
Target:  5'- gCGGUacCGCGGcGUGuuCGCCGcGCUCgCGc -3'
miRNA:   3'- -GCCA--GCGCC-CGCugGCGGC-CGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 27644 0.66 0.595346
Target:  5'- cCGGgCGCGGggcGCGGCCGCCGcggaggucGUcCUCGc -3'
miRNA:   3'- -GCCaGCGCC---CGCUGGCGGC--------CGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 66153 0.66 0.595346
Target:  5'- ---cCGC-GGCGGCaGCUGGCUCUUGa -3'
miRNA:   3'- gccaGCGcCCGCUGgCGGCCGAGAGC- -5'
31026 3' -64.2 NC_006560.1 + 85245 0.66 0.595346
Target:  5'- cCGGcgccCGCGGcGCGGaaGCCGGCgCUgCGg -3'
miRNA:   3'- -GCCa---GCGCC-CGCUggCGGCCGaGA-GC- -5'
31026 3' -64.2 NC_006560.1 + 148969 0.66 0.595346
Target:  5'- gCGGUgGCGcgaccaaccGGCGG-CGCCGGCaUCaUCGa -3'
miRNA:   3'- -GCCAgCGC---------CCGCUgGCGGCCG-AG-AGC- -5'
31026 3' -64.2 NC_006560.1 + 88358 0.66 0.592491
Target:  5'- cCGGcCGUGGGCGcgccaggcacccCCGCCGuGCUgcgcgugCUCGa -3'
miRNA:   3'- -GCCaGCGCCCGCu-----------GGCGGC-CGA-------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 67550 0.66 0.58584
Target:  5'- uCGGUguCGGGgauCGACCGCCGGUccguUCUgGg -3'
miRNA:   3'- -GCCAgcGCCC---GCUGGCGGCCG----AGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.