miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 3' -56.1 NC_006560.1 + 10557 0.66 0.911834
Target:  5'- gGCGUCGACGacGGucuCCaGCaCCUGCcCGGg -3'
miRNA:   3'- -UGCAGUUGU--UCu--GG-CG-GGACGaGCCg -5'
31027 3' -56.1 NC_006560.1 + 42869 0.66 0.911834
Target:  5'- gGCGUCAGCA--GCCGCUCcGcCUCcGCc -3'
miRNA:   3'- -UGCAGUUGUucUGGCGGGaC-GAGcCG- -5'
31027 3' -56.1 NC_006560.1 + 50388 0.66 0.911834
Target:  5'- gGCGuUCGACGAGGgCGacuaCCCggGCgCGGCg -3'
miRNA:   3'- -UGC-AGUUGUUCUgGC----GGGa-CGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 53827 0.66 0.911834
Target:  5'- gACGaCGGCGGGcCgGCCCggGC-CGGCc -3'
miRNA:   3'- -UGCaGUUGUUCuGgCGGGa-CGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 71656 0.66 0.911834
Target:  5'- gGCGUgGACGcGGGCCucggccggcggcGCCCccccgcguaugUGCUCGGUc -3'
miRNA:   3'- -UGCAgUUGU-UCUGG------------CGGG-----------ACGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 18120 0.66 0.911834
Target:  5'- uGCGUC--CGGGGCCGCgCCg---CGGCg -3'
miRNA:   3'- -UGCAGuuGUUCUGGCG-GGacgaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 39588 0.66 0.911834
Target:  5'- gACGUCGgugGCGGGcgcGCCgGCCCgcggaGCgccgCGGCg -3'
miRNA:   3'- -UGCAGU---UGUUC---UGG-CGGGa----CGa---GCCG- -5'
31027 3' -56.1 NC_006560.1 + 53760 0.66 0.911834
Target:  5'- gACG-CuGCGGGGCgGCCCgucgGUcgCGGCg -3'
miRNA:   3'- -UGCaGuUGUUCUGgCGGGa---CGa-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 78902 0.66 0.911834
Target:  5'- gGCGUUccCGGGGgCGCCC-GCguacCGGCg -3'
miRNA:   3'- -UGCAGuuGUUCUgGCGGGaCGa---GCCG- -5'
31027 3' -56.1 NC_006560.1 + 17788 0.66 0.905767
Target:  5'- cCGcUCGACGGccuccGGCCGCCCgGCuuccUCGGUc -3'
miRNA:   3'- uGC-AGUUGUU-----CUGGCGGGaCG----AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 9124 0.66 0.905767
Target:  5'- cACGUCAuuGCGAGG--GCCCgcagGUcuUCGGCg -3'
miRNA:   3'- -UGCAGU--UGUUCUggCGGGa---CG--AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 22543 0.66 0.905767
Target:  5'- cCGUCGACucGGACCccgaCCCggacccggGCUCGGa -3'
miRNA:   3'- uGCAGUUGu-UCUGGc---GGGa-------CGAGCCg -5'
31027 3' -56.1 NC_006560.1 + 23810 0.66 0.905767
Target:  5'- cCG-CGGCAGGugCGCUCcG-UCGGCg -3'
miRNA:   3'- uGCaGUUGUUCugGCGGGaCgAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 79658 0.66 0.905767
Target:  5'- aACGUcCGGC---GCC-CCCcGCUCGGCg -3'
miRNA:   3'- -UGCA-GUUGuucUGGcGGGaCGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 72112 0.66 0.905767
Target:  5'- gGCcUCGcCGcGGCCGCCCUGC--GGCu -3'
miRNA:   3'- -UGcAGUuGUuCUGGCGGGACGagCCG- -5'
31027 3' -56.1 NC_006560.1 + 95055 0.66 0.905767
Target:  5'- cCGgcccGCGAGGCCgGCCCggagaGCUgGGCg -3'
miRNA:   3'- uGCagu-UGUUCUGG-CGGGa----CGAgCCG- -5'
31027 3' -56.1 NC_006560.1 + 139055 0.66 0.903902
Target:  5'- gUGUCccGGCccgugccgggcccgGGGGCgCGCCCUGC-CGGCc -3'
miRNA:   3'- uGCAG--UUG--------------UUCUG-GCGGGACGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 59223 0.66 0.900107
Target:  5'- uGCG-CAGCGGGGCaaaCGCCCgcagcauauuguccaGCUCGGg -3'
miRNA:   3'- -UGCaGUUGUUCUG---GCGGGa--------------CGAGCCg -5'
31027 3' -56.1 NC_006560.1 + 129004 0.66 0.899467
Target:  5'- cGCG-CGACuucuGCCGCuuCCUGCgCGGCg -3'
miRNA:   3'- -UGCaGUUGuuc-UGGCG--GGACGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 120289 0.66 0.899467
Target:  5'- cCGUCGGCccacgcGGACucggucaaCGCCCUGUgggacUCGGCc -3'
miRNA:   3'- uGCAGUUGu-----UCUG--------GCGGGACG-----AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.