miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 5' -67.4 NC_006560.1 + 72817 0.66 0.421009
Target:  5'- cCGCCGgaacGGCaGCCCgCGGCagaCGCgACCGa -3'
miRNA:   3'- uGCGGU----CCGaCGGGgGCCG---GCG-UGGC- -5'
31027 5' -67.4 NC_006560.1 + 1355 0.66 0.421009
Target:  5'- uGCGCgCGGGUc-CCCCgCGGCCcGCACgGc -3'
miRNA:   3'- -UGCG-GUCCGacGGGG-GCCGG-CGUGgC- -5'
31027 5' -67.4 NC_006560.1 + 19910 0.66 0.421009
Target:  5'- gACGCCgcAGGCggucaGCCgCgCCGcguggguugauGCCGCGCCGc -3'
miRNA:   3'- -UGCGG--UCCGa----CGG-G-GGC-----------CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 38714 0.66 0.421009
Target:  5'- -aGCCGGGUgcucagGUucucgaggacggCCCCGGCCGUGgCGa -3'
miRNA:   3'- ugCGGUCCGa-----CG------------GGGGCCGGCGUgGC- -5'
31027 5' -67.4 NC_006560.1 + 88982 0.66 0.421009
Target:  5'- -gGCC-GGCU-CCCCCGG-CGC-CCGu -3'
miRNA:   3'- ugCGGuCCGAcGGGGGCCgGCGuGGC- -5'
31027 5' -67.4 NC_006560.1 + 130790 0.66 0.421009
Target:  5'- uGCGCgAGGCgGUgCUgCGGCCGCgggGCCa -3'
miRNA:   3'- -UGCGgUCCGaCGgGG-GCCGGCG---UGGc -5'
31027 5' -67.4 NC_006560.1 + 25242 0.66 0.421009
Target:  5'- cGCGCCcuGCccgaGCcggaCCCCGacGCCGCGCCGc -3'
miRNA:   3'- -UGCGGucCGa---CG----GGGGC--CGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 40311 0.66 0.421009
Target:  5'- cGCGCUugggcGGGCgcgGCCCCUucuccggcccgGGCgGgGCCGa -3'
miRNA:   3'- -UGCGG-----UCCGa--CGGGGG-----------CCGgCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 48116 0.66 0.421009
Target:  5'- gACGCCGcGacgGCCCCgaGGCCGUacGCCa -3'
miRNA:   3'- -UGCGGUcCga-CGGGGg-CCGGCG--UGGc -5'
31027 5' -67.4 NC_006560.1 + 99331 0.66 0.421009
Target:  5'- cGCGCCGacGGCcgccGCCUCCcaCUGCGCCGg -3'
miRNA:   3'- -UGCGGU--CCGa---CGGGGGccGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 112336 0.66 0.421009
Target:  5'- aACGCCcacCUGCCCuUCGaGCUGCACCc -3'
miRNA:   3'- -UGCGGuccGACGGG-GGC-CGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 108606 0.66 0.420189
Target:  5'- gGCGCCGcGCgcGCCcgcgagcgaCCCggcgaugGGCCGCGCCGa -3'
miRNA:   3'- -UGCGGUcCGa-CGG---------GGG-------CCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 118868 0.66 0.420189
Target:  5'- gGCGCgCGugcagacGGCgugccuccggGCCCUgGGCUGCGCCa -3'
miRNA:   3'- -UGCG-GU-------CCGa---------CGGGGgCCGGCGUGGc -5'
31027 5' -67.4 NC_006560.1 + 63841 0.66 0.412848
Target:  5'- aGCGCCGGGCcuccucGCCCgCCaGCaCGC-CCu -3'
miRNA:   3'- -UGCGGUCCGa-----CGGG-GGcCG-GCGuGGc -5'
31027 5' -67.4 NC_006560.1 + 95097 0.66 0.412848
Target:  5'- -gGCCGGGCcGCCgCCGacguccGCgaGCGCCGg -3'
miRNA:   3'- ugCGGUCCGaCGGgGGC------CGg-CGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 107885 0.66 0.412848
Target:  5'- cCGUCAGGCggGCgaCCCggguGGCCGCGgCCa -3'
miRNA:   3'- uGCGGUCCGa-CGg-GGG----CCGGCGU-GGc -5'
31027 5' -67.4 NC_006560.1 + 148407 0.66 0.412848
Target:  5'- gACGCgGGGC-GCUCCgGGC-GgGCCGg -3'
miRNA:   3'- -UGCGgUCCGaCGGGGgCCGgCgUGGC- -5'
31027 5' -67.4 NC_006560.1 + 85857 0.66 0.412848
Target:  5'- cGCGCCcgaAGGCgucgaGCCCcgCCGGCaggggguGCGCCa -3'
miRNA:   3'- -UGCGG---UCCGa----CGGG--GGCCGg------CGUGGc -5'
31027 5' -67.4 NC_006560.1 + 96941 0.66 0.412848
Target:  5'- aGCGCgaccucucgaCGGGCcGCCgCgCC-GCCGCGCCGg -3'
miRNA:   3'- -UGCG----------GUCCGaCGG-G-GGcCGGCGUGGC- -5'
31027 5' -67.4 NC_006560.1 + 53294 0.66 0.412848
Target:  5'- aGCGCCAGGagcGCUUCU-GUCGCGCCa -3'
miRNA:   3'- -UGCGGUCCga-CGGGGGcCGGCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.