miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 69445 0.66 0.541203
Target:  5'- uGCGaGGCCG-C-GGgGCUGGCggggGGCGu -3'
miRNA:   3'- cCGC-CCGGCuGaCCgUGGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 4750 0.66 0.541203
Target:  5'- cGGCGgcGGCCcGC-GGCGgCGGC-GGCGc -3'
miRNA:   3'- -CCGC--CCGGcUGaCCGUgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 65333 0.66 0.539334
Target:  5'- gGGUggGGGCCGGCU--CGCCGGCcccagccccgucGGCGg -3'
miRNA:   3'- -CCG--CCCGGCUGAccGUGGCCGa-----------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 66764 0.66 0.535603
Target:  5'- gGGCGaGGaCGAC-GGCccccgcgcgguccgcGuCCGGCUGGCa -3'
miRNA:   3'- -CCGC-CCgGCUGaCCG---------------U-GGCCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 23374 0.66 0.531881
Target:  5'- cGGCcucGCCGGCUacGGCGCC-GCgGGCGu -3'
miRNA:   3'- -CCGcc-CGGCUGA--CCGUGGcCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 112837 0.66 0.531881
Target:  5'- uGGUGGG-CGACUucacgcucccggGGC-CCGaGCUcGGCGg -3'
miRNA:   3'- -CCGCCCgGCUGA------------CCGuGGC-CGA-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 123044 0.66 0.531881
Target:  5'- uGGCGGGCCcGCgcggcGaGCACCccCUGGUGa -3'
miRNA:   3'- -CCGCCCGGcUGa----C-CGUGGccGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 15550 0.66 0.531881
Target:  5'- cGGCcaGGCCGACcaggaGGCuCUGGggGGCGg -3'
miRNA:   3'- -CCGc-CCGGCUGa----CCGuGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 77990 0.66 0.531881
Target:  5'- cGCGccuGGCgGACUGGCGCCacGGCaaGCu -3'
miRNA:   3'- cCGC---CCGgCUGACCGUGG--CCGacCGc -5'
31028 5' -64.9 NC_006560.1 + 121565 0.66 0.531881
Target:  5'- gGGCGGGaCCaGGCUauuaaacagcaGGCGCCGcGCcacGGCc -3'
miRNA:   3'- -CCGCCC-GG-CUGA-----------CCGUGGC-CGa--CCGc -5'
31028 5' -64.9 NC_006560.1 + 122547 0.66 0.531881
Target:  5'- uGCGGGCCGgguucucgcGgUGGCgacugaGCCGGUcGGCc -3'
miRNA:   3'- cCGCCCGGC---------UgACCG------UGGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 142181 0.66 0.531881
Target:  5'- cGCGGGCCcuaauGGgaGGCG-CGGCcuccgGGCGg -3'
miRNA:   3'- cCGCCCGG-----CUgaCCGUgGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 134445 0.66 0.531881
Target:  5'- gGGCccGGCUGAC-GGCGCgGGC-GGCc -3'
miRNA:   3'- -CCGc-CCGGCUGaCCGUGgCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 120524 0.66 0.529096
Target:  5'- aGCGGggcGCCGAgaGGauccggcccgaaucCGCCGGgUGGCGc -3'
miRNA:   3'- cCGCC---CGGCUgaCC--------------GUGGCCgACCGC- -5'
31028 5' -64.9 NC_006560.1 + 55277 0.66 0.529096
Target:  5'- cGGCGacGCCGGCccacucgagcgcggUGGuCACCuGCUGGCc -3'
miRNA:   3'- -CCGCc-CGGCUG--------------ACC-GUGGcCGACCGc -5'
31028 5' -64.9 NC_006560.1 + 114184 0.66 0.526316
Target:  5'- cGCGGGCaacCGGCUGGgcccggcccagccccUGCCGGUcuuUGGCu -3'
miRNA:   3'- cCGCCCG---GCUGACC---------------GUGGCCG---ACCGc -5'
31028 5' -64.9 NC_006560.1 + 58243 0.66 0.522618
Target:  5'- gGGCcggGGGCCGcCgaGGCgagccGCCGGCcucGGCGu -3'
miRNA:   3'- -CCG---CCCGGCuGa-CCG-----UGGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 150125 0.66 0.522618
Target:  5'- cGCGcGCCGGC-GGCcucagcuuCCGGCgGGCGc -3'
miRNA:   3'- cCGCcCGGCUGaCCGu-------GGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 113003 0.66 0.522618
Target:  5'- gGGCGGGCaCGACcccgucuacgUGGCGgCCugcaaccugGGCacGGCGg -3'
miRNA:   3'- -CCGCCCG-GCUG----------ACCGU-GG---------CCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 32797 0.66 0.522618
Target:  5'- gGGgGGGCCGGg-GGCGC-GGCcGGgGa -3'
miRNA:   3'- -CCgCCCGGCUgaCCGUGgCCGaCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.