miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 3' -59.2 NC_006560.1 + 3411 0.66 0.792907
Target:  5'- gCGCGCCggCGgg-CGGGCgGcGGGCg- -3'
miRNA:   3'- aGCGCGGa-GUauaGCCCGgC-CUCGac -5'
31029 3' -59.2 NC_006560.1 + 66341 0.66 0.792907
Target:  5'- gCGCgGCCUCGUGg-GGGCCGccGCa- -3'
miRNA:   3'- aGCG-CGGAGUAUagCCCGGCcuCGac -5'
31029 3' -59.2 NC_006560.1 + 10475 0.66 0.792907
Target:  5'- aCGcCGCCUCG----GGGCCcGGGGCg- -3'
miRNA:   3'- aGC-GCGGAGUauagCCCGG-CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 21741 0.66 0.783936
Target:  5'- -gGCGCCgccCGUcgCcGGCCGGGGUa- -3'
miRNA:   3'- agCGCGGa--GUAuaGcCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 81138 0.66 0.783936
Target:  5'- aCGCG-CUCgggguggaggGUGUCGGGCCGGuggaacuGCg- -3'
miRNA:   3'- aGCGCgGAG----------UAUAGCCCGGCCu------CGac -5'
31029 3' -59.2 NC_006560.1 + 99355 0.66 0.783936
Target:  5'- cUGCGCCggcugggCGUAcUgGGGCgGGGGCg- -3'
miRNA:   3'- aGCGCGGa------GUAU-AgCCCGgCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 137621 0.66 0.783936
Target:  5'- gUGCGCCggCGgcaCGcGGCCgcGGGGCUGg -3'
miRNA:   3'- aGCGCGGa-GUauaGC-CCGG--CCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 138181 0.66 0.783936
Target:  5'- aCGCGCgC-CAUcgCGucCCGGGGCUGc -3'
miRNA:   3'- aGCGCG-GaGUAuaGCccGGCCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 149969 0.66 0.783936
Target:  5'- gCGCGUgUCGgAUCGGGuccgcgcuaCCGGGGCc- -3'
miRNA:   3'- aGCGCGgAGUaUAGCCC---------GGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 11583 0.66 0.783936
Target:  5'- cCGcCGCCUCGgggGUCgcgGGGuuGGGGgaGa -3'
miRNA:   3'- aGC-GCGGAGUa--UAG---CCCggCCUCgaC- -5'
31029 3' -59.2 NC_006560.1 + 102157 0.66 0.783032
Target:  5'- aUGCGCC-CGUcgcggaaGUCGGcGCCGcGGGCg- -3'
miRNA:   3'- aGCGCGGaGUA-------UAGCC-CGGC-CUCGac -5'
31029 3' -59.2 NC_006560.1 + 106557 0.66 0.781219
Target:  5'- aCGCGCucuacgccggguucCUCGg---GGGCCGGGGcCUGg -3'
miRNA:   3'- aGCGCG--------------GAGUauagCCCGGCCUC-GAC- -5'
31029 3' -59.2 NC_006560.1 + 38135 0.66 0.77849
Target:  5'- aCGaCGCCggcguuuugugggcaUCGUGggagGGGCCGGGGCg- -3'
miRNA:   3'- aGC-GCGG---------------AGUAUag--CCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 2219 0.66 0.774834
Target:  5'- -aGCGCCagGUAgaCGGGCCGcAGCg- -3'
miRNA:   3'- agCGCGGagUAUa-GCCCGGCcUCGac -5'
31029 3' -59.2 NC_006560.1 + 134769 0.66 0.774834
Target:  5'- gCGCGCCagcgCGcgcaGGGUCGGGGCg- -3'
miRNA:   3'- aGCGCGGa---GUauagCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 1959 0.66 0.774834
Target:  5'- gUCGCGCC-Cccca-GGGCgGGGGCg- -3'
miRNA:   3'- -AGCGCGGaGuauagCCCGgCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 113644 0.66 0.774834
Target:  5'- aCGCGCC-CGgcuUCcccgcgGGGCUgcgGGAGCUGg -3'
miRNA:   3'- aGCGCGGaGUau-AG------CCCGG---CCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 57759 0.66 0.773917
Target:  5'- gCGCGCgUCGg--CGGGCagcaccaCGGAGCc- -3'
miRNA:   3'- aGCGCGgAGUauaGCCCG-------GCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 93365 0.66 0.765608
Target:  5'- aCGCGCCUCccgugccGUCGGGggggGGGGCUu -3'
miRNA:   3'- aGCGCGGAGua-----UAGCCCgg--CCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 3316 0.66 0.765608
Target:  5'- -aGCGCCg-----CGGGCCgGGGGCg- -3'
miRNA:   3'- agCGCGGaguauaGCCCGG-CCUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.