miRNA display CGI


Results 1 - 20 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 5' -59.1 NC_006560.1 + 125871 0.65 0.805454
Target:  5'- cCGCGGGCCCCccgucuaggggcgACCgCCACUGgagccgcagCGGCCg -3'
miRNA:   3'- -GUGUCUGGGG-------------UGG-GGUGGUa--------GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 145587 0.65 0.805454
Target:  5'- -cCGGGCCCCgcucgcuGCCCCGCCugcCGccccACCUg -3'
miRNA:   3'- guGUCUGGGG-------UGGGGUGGua-GC----UGGA- -5'
31029 5' -59.1 NC_006560.1 + 73944 0.66 0.797584
Target:  5'- --uGGAgUCCCugCCCGCCuUCGACg- -3'
miRNA:   3'- gugUCU-GGGGugGGGUGGuAGCUGga -5'
31029 5' -59.1 NC_006560.1 + 136484 0.66 0.797584
Target:  5'- gUACGGGCUCCcCCUCACCGagGAgCa -3'
miRNA:   3'- -GUGUCUGGGGuGGGGUGGUagCUgGa -5'
31029 5' -59.1 NC_006560.1 + 29705 0.66 0.797584
Target:  5'- aCGgGGGCCgcgaCCGCCCCGCCucCGACg- -3'
miRNA:   3'- -GUgUCUGG----GGUGGGGUGGuaGCUGga -5'
31029 5' -59.1 NC_006560.1 + 145875 0.66 0.797584
Target:  5'- gCGCGGcgaGCCCCACCCCcgcguCCcuacggGUCGcCCUc -3'
miRNA:   3'- -GUGUC---UGGGGUGGGGu----GG------UAGCuGGA- -5'
31029 5' -59.1 NC_006560.1 + 37674 0.66 0.797584
Target:  5'- cCGCGGAUCCgGCCgCGCCGggCG-CCg -3'
miRNA:   3'- -GUGUCUGGGgUGGgGUGGUa-GCuGGa -5'
31029 5' -59.1 NC_006560.1 + 142912 0.66 0.797584
Target:  5'- cCGCGGaACCCCgcaGCCCCcgacACCugcgggCGACCc -3'
miRNA:   3'- -GUGUC-UGGGG---UGGGG----UGGua----GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 69996 0.66 0.796703
Target:  5'- cCGgGGGCCgacgccgCCGCCCCACCccCGACg- -3'
miRNA:   3'- -GUgUCUGG-------GGUGGGGUGGuaGCUGga -5'
31029 5' -59.1 NC_006560.1 + 41940 0.66 0.796703
Target:  5'- uCACccGCgCCACCCCGCgcaucguCGUCGGCCc -3'
miRNA:   3'- -GUGucUGgGGUGGGGUG-------GUAGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 145836 0.66 0.788704
Target:  5'- gGCGGGCCgggggCGCCCC-CC-UCGGCCc -3'
miRNA:   3'- gUGUCUGGg----GUGGGGuGGuAGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 6846 0.66 0.788704
Target:  5'- uCACcucGGCCUCugCCCGCCcgCGcCCc -3'
miRNA:   3'- -GUGu--CUGGGGugGGGUGGuaGCuGGa -5'
31029 5' -59.1 NC_006560.1 + 83608 0.66 0.788704
Target:  5'- --gGGGCCCCGCCuCCGCgCggCGGCg- -3'
miRNA:   3'- gugUCUGGGGUGG-GGUG-GuaGCUGga -5'
31029 5' -59.1 NC_006560.1 + 143859 0.66 0.788704
Target:  5'- gCGCGcGcCCCCACgCCCGCgGcCGACCc -3'
miRNA:   3'- -GUGU-CuGGGGUG-GGGUGgUaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 73515 0.66 0.788704
Target:  5'- -cCGGACaCCCucuucgcCCCCGCCAcccCGACCc -3'
miRNA:   3'- guGUCUG-GGGu------GGGGUGGUa--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 54594 0.66 0.788704
Target:  5'- aCGCGcccGACgCCCgcgcGCCCaCGCCcgCGACCg -3'
miRNA:   3'- -GUGU---CUG-GGG----UGGG-GUGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 125528 0.66 0.788704
Target:  5'- cCGCGGugCgCGCCgCCGCCGgggCGuCCa -3'
miRNA:   3'- -GUGUCugGgGUGG-GGUGGUa--GCuGGa -5'
31029 5' -59.1 NC_006560.1 + 59882 0.66 0.779689
Target:  5'- cCGCGGGCUgcuUCACCCCgauaGCgGUgGACCUg -3'
miRNA:   3'- -GUGUCUGG---GGUGGGG----UGgUAgCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 54050 0.66 0.779689
Target:  5'- cUACGGcuggggcgacucGCCCCucuucuCCCCGCCccCGGCCg -3'
miRNA:   3'- -GUGUC------------UGGGGu-----GGGGUGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 31689 0.66 0.779689
Target:  5'- gGgAGACCCCGCCCacgGCCucuggaUGACCc -3'
miRNA:   3'- gUgUCUGGGGUGGGg--UGGua----GCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.