miRNA display CGI


Results 1 - 20 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 55764 0.66 0.885076
Target:  5'- -cGCGUCGaC-GCGggU-GCGCACCCg -3'
miRNA:   3'- guCGCAGUcGuCGCuuGgCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 6413 0.66 0.885076
Target:  5'- gCGGCGccgCGGcCGGCccGCCGCACAacgCCg -3'
miRNA:   3'- -GUCGCa--GUC-GUCGcuUGGCGUGUg--GG- -5'
31030 3' -56.9 NC_006560.1 + 36856 0.66 0.885076
Target:  5'- aGGCGg-GGUucgAGCGucCCGCcGCGCCCa -3'
miRNA:   3'- gUCGCagUCG---UCGCuuGGCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 53630 0.66 0.885076
Target:  5'- uCGGCGcccugCGGCGGCucguugccgGGGCCGCccgGgACCCg -3'
miRNA:   3'- -GUCGCa----GUCGUCG---------CUUGGCG---UgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 91654 0.66 0.885076
Target:  5'- cCAGCcaGUCGGUGGaGGGCCGCAacuUCCg -3'
miRNA:   3'- -GUCG--CAGUCGUCgCUUGGCGUgu-GGG- -5'
31030 3' -56.9 NC_006560.1 + 91918 0.66 0.885076
Target:  5'- gGGCGcCaacgccucggaGGCGGCcaaGAGCCGCAuCGCCg -3'
miRNA:   3'- gUCGCaG-----------UCGUCG---CUUGGCGU-GUGGg -5'
31030 3' -56.9 NC_006560.1 + 113668 0.66 0.885076
Target:  5'- -uGCGggAGCuGGCccGGACCGCGC-CCCu -3'
miRNA:   3'- guCGCagUCG-UCG--CUUGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 121618 0.66 0.885076
Target:  5'- gGGCGUgcucgCAGCAaucGUGAAgCGUccccACGCCCg -3'
miRNA:   3'- gUCGCA-----GUCGU---CGCUUgGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 128687 0.66 0.885076
Target:  5'- gGGCGggGGCGcGCucgGAGCCGgucuuCACGCCCa -3'
miRNA:   3'- gUCGCagUCGU-CG---CUUGGC-----GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 142294 0.66 0.885076
Target:  5'- gCGGCGggcgCGGcCGGCGccGGCCGCugGagcuCCCc -3'
miRNA:   3'- -GUCGCa---GUC-GUCGC--UUGGCGugU----GGG- -5'
31030 3' -56.9 NC_006560.1 + 9516 0.66 0.885076
Target:  5'- -cGCGcCGGCAgGUGA--CGCAgGCCCa -3'
miRNA:   3'- guCGCaGUCGU-CGCUugGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 57146 0.66 0.885076
Target:  5'- gGGCGUCGGC-GCcGACC-CACGCg- -3'
miRNA:   3'- gUCGCAGUCGuCGcUUGGcGUGUGgg -5'
31030 3' -56.9 NC_006560.1 + 97631 0.66 0.885076
Target:  5'- cCAcCGUCGGCcgccgGGUGAGCgCGCGCAUgCu -3'
miRNA:   3'- -GUcGCAGUCG-----UCGCUUG-GCGUGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 109186 0.66 0.885076
Target:  5'- -cGCGUgGGCGGCaGACgGaguagaCGCACCCc -3'
miRNA:   3'- guCGCAgUCGUCGcUUGgC------GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 123025 0.66 0.884387
Target:  5'- gGGCGcuacaUCGGCcagcuGGCGGGcCCGCgcggcgaGCACCCc -3'
miRNA:   3'- gUCGC-----AGUCG-----UCGCUU-GGCG-------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 139052 0.66 0.878082
Target:  5'- gCGGUGUCccGGCccguGcCGGGCCcggggGCGCGCCCu -3'
miRNA:   3'- -GUCGCAG--UCGu---C-GCUUGG-----CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 127706 0.66 0.878082
Target:  5'- -uGCGUgA-CGGUGGuCCGCGCGCCg -3'
miRNA:   3'- guCGCAgUcGUCGCUuGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 127363 0.66 0.878082
Target:  5'- -cGCGUagaAGCAGgGAAagGC-CGCCCg -3'
miRNA:   3'- guCGCAg--UCGUCgCUUggCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 43671 0.66 0.878082
Target:  5'- gAGCGUggucaGGCcgcgcugcccgAGCGGGgCGCGCGCCa -3'
miRNA:   3'- gUCGCAg----UCG-----------UCGCUUgGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 84497 0.66 0.878082
Target:  5'- gAGCGguaCcGCGGCGuguucGCCGCGCucgcgcagacGCCCu -3'
miRNA:   3'- gUCGCa--GuCGUCGCu----UGGCGUG----------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.