miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 5' -54.8 NC_006560.1 + 18058 0.66 0.945888
Target:  5'- -cAAGgUCCCGccguguuucucGGUC-CCCCCGCCc- -3'
miRNA:   3'- caUUUgAGGGC-----------UUAGaGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 50647 0.66 0.945888
Target:  5'- -gGGGCcCCCGAcgacccggcgGUCUUCUaCCGCCGGa -3'
miRNA:   3'- caUUUGaGGGCU----------UAGAGGG-GGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 79509 0.66 0.944997
Target:  5'- ---cGCgccgCCCGGcccaccgucggCUCCCUCGCCAGc -3'
miRNA:   3'- cauuUGa---GGGCUua---------GAGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 142391 0.66 0.941336
Target:  5'- -aGGGCcgagCCCGAg---CCCCCGCCGc -3'
miRNA:   3'- caUUUGa---GGGCUuagaGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 6381 0.66 0.941336
Target:  5'- ---cGC-CCCGcccUUCCCCCGCCGa -3'
miRNA:   3'- cauuUGaGGGCuuaGAGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 52300 0.66 0.941336
Target:  5'- uGgcGGCUgCCug--CUCCCCaCGCCGGa -3'
miRNA:   3'- -CauUUGAgGGcuuaGAGGGG-GCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 144095 0.66 0.936544
Target:  5'- ---uGCUCCUGGugGUCUCCgCCgGCCc- -3'
miRNA:   3'- cauuUGAGGGCU--UAGAGG-GGgCGGuc -5'
31030 5' -54.8 NC_006560.1 + 7387 0.66 0.936544
Target:  5'- -aGAGC-CCCGAccucCUCgagagCCCCGCCGGc -3'
miRNA:   3'- caUUUGaGGGCUua--GAG-----GGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 143989 0.66 0.936544
Target:  5'- ----uCUCUCuc-UCUCCCCCGCCu- -3'
miRNA:   3'- cauuuGAGGGcuuAGAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 144069 0.66 0.931508
Target:  5'- ---cGCcCCCGGcgC-CCCCCGCCc- -3'
miRNA:   3'- cauuUGaGGGCUuaGaGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 22167 0.66 0.92623
Target:  5'- -gAGACggCCCGGGcgCUgUCCCCGCCGu -3'
miRNA:   3'- caUUUGa-GGGCUUa-GA-GGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 1270 0.66 0.92623
Target:  5'- -gAAGCcCCCGcgaagCCCCCGCCGc -3'
miRNA:   3'- caUUUGaGGGCuuagaGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 70116 0.66 0.92623
Target:  5'- --cAGCUgcccCCCGug---CCCCCGCCGGa -3'
miRNA:   3'- cauUUGA----GGGCuuagaGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 17024 0.66 0.925145
Target:  5'- uUGAugUCCCGGuggaugaugCCCUCGCCGu -3'
miRNA:   3'- cAUUugAGGGCUuaga-----GGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 72927 0.66 0.920707
Target:  5'- --cGGCcCCCGGAgC-CCCCCGCCu- -3'
miRNA:   3'- cauUUGaGGGCUUaGaGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 1210 0.66 0.920707
Target:  5'- -cAGGCUcCCCGGGggCggggCCCCUGCCGc -3'
miRNA:   3'- caUUUGA-GGGCUUa-Ga---GGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 85851 0.67 0.914942
Target:  5'- -cGAGCacgcgCCCGAaggcGUCgagCCCCGCCGGc -3'
miRNA:   3'- caUUUGa----GGGCU----UAGag-GGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 20115 0.67 0.914942
Target:  5'- cUGGACUCCgGAAaaacgaCCCCCGCgCGGc -3'
miRNA:   3'- cAUUUGAGGgCUUaga---GGGGGCG-GUC- -5'
31030 5' -54.8 NC_006560.1 + 81112 0.67 0.908935
Target:  5'- -cGAGCUCCCGcAUC-CCCagCGCCu- -3'
miRNA:   3'- caUUUGAGGGCuUAGaGGGg-GCGGuc -5'
31030 5' -54.8 NC_006560.1 + 144887 0.67 0.908935
Target:  5'- cUGAGCgCCCauguUCUCCCCgGCCGc -3'
miRNA:   3'- cAUUUGaGGGcuu-AGAGGGGgCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.