miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31031 3' -59.1 NC_006560.1 + 33160 0.65 0.830314
Target:  5'- aGGGgccCGCGGGgaaggcggccGCGGGGAaggggccCGCGGGGa -3'
miRNA:   3'- gCCCa--GCGCUC----------UGCCCCU-------GCGUCUUc -5'
31031 3' -59.1 NC_006560.1 + 30260 0.66 0.822953
Target:  5'- gCGGGaggcCGCGGGA-GGGGA-GgGGAGGg -3'
miRNA:   3'- -GCCCa---GCGCUCUgCCCCUgCgUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 36311 0.66 0.822953
Target:  5'- gGGGggaGgGGGAUGGGGGgGaGGAGGg -3'
miRNA:   3'- gCCCag-CgCUCUGCCCCUgCgUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 42553 0.66 0.822953
Target:  5'- gGGGUCGC---GCGGGGAgGCGc--- -3'
miRNA:   3'- gCCCAGCGcucUGCCCCUgCGUcuuc -5'
31031 3' -59.1 NC_006560.1 + 77860 0.66 0.822953
Target:  5'- gCGGcGUgG-GAGACGGGGGC-CGGGGc -3'
miRNA:   3'- -GCC-CAgCgCUCUGCCCCUGcGUCUUc -5'
31031 3' -59.1 NC_006560.1 + 81193 0.66 0.822953
Target:  5'- -uGG-CGCGGGugGGGG-CGCgacggcgaccGGGAGg -3'
miRNA:   3'- gcCCaGCGCUCugCCCCuGCG----------UCUUC- -5'
31031 3' -59.1 NC_006560.1 + 124134 0.66 0.822953
Target:  5'- aCGGcGUCGCGGcgccGGCGGGGGagGCcGAGc -3'
miRNA:   3'- -GCC-CAGCGCU----CUGCCCCUg-CGuCUUc -5'
31031 3' -59.1 NC_006560.1 + 120767 0.66 0.814618
Target:  5'- gGGGUgggGCGAGGggaGGGGAgggGCGGggGa -3'
miRNA:   3'- gCCCAg--CGCUCUg--CCCCUg--CGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 16298 0.66 0.814618
Target:  5'- uGGGgCGCG--GCGGGG-CGCGGGc- -3'
miRNA:   3'- gCCCaGCGCucUGCCCCuGCGUCUuc -5'
31031 3' -59.1 NC_006560.1 + 26934 0.66 0.814618
Target:  5'- gGGGagGCc--GCGGGGcCGCGGAGGn -3'
miRNA:   3'- gCCCagCGcucUGCCCCuGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 43146 0.66 0.814618
Target:  5'- gGGGUCGCGAGuCGucacGGCGUcGAGGu -3'
miRNA:   3'- gCCCAGCGCUCuGCcc--CUGCGuCUUC- -5'
31031 3' -59.1 NC_006560.1 + 13028 0.66 0.814618
Target:  5'- cCGGGcCGCGGcGGCaggccgucggGGGGAUgcgcaGCGGAAGc -3'
miRNA:   3'- -GCCCaGCGCU-CUG----------CCCCUG-----CGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 17701 0.66 0.814618
Target:  5'- gGGGUCGUG-GGCGGcGGC-CGGAAa -3'
miRNA:   3'- gCCCAGCGCuCUGCCcCUGcGUCUUc -5'
31031 3' -59.1 NC_006560.1 + 147947 0.66 0.814618
Target:  5'- cCGGGagGCGGGccCGGGcuCGCAGAGc -3'
miRNA:   3'- -GCCCagCGCUCu-GCCCcuGCGUCUUc -5'
31031 3' -59.1 NC_006560.1 + 17556 0.66 0.814618
Target:  5'- cCGGGUaCGCGAcGucguCGGGGGCGUc---- -3'
miRNA:   3'- -GCCCA-GCGCU-Cu---GCCCCUGCGucuuc -5'
31031 3' -59.1 NC_006560.1 + 26258 0.66 0.806129
Target:  5'- aGGGgggCGCGucGCGGGGcucGCGCcgccgGGGAGc -3'
miRNA:   3'- gCCCa--GCGCucUGCCCC---UGCG-----UCUUC- -5'
31031 3' -59.1 NC_006560.1 + 50292 0.66 0.806129
Target:  5'- gGGGUaccUG-GGGGCGGuGGACGCGucGGAGa -3'
miRNA:   3'- gCCCA---GCgCUCUGCC-CCUGCGU--CUUC- -5'
31031 3' -59.1 NC_006560.1 + 11912 0.66 0.806129
Target:  5'- aCGGcGUcCGCGAagccGCGGGccCGCAGGAGg -3'
miRNA:   3'- -GCC-CA-GCGCUc---UGCCCcuGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 50410 0.66 0.806129
Target:  5'- cCGGG-CGCG--GCGGGGGCGgAGu-- -3'
miRNA:   3'- -GCCCaGCGCucUGCCCCUGCgUCuuc -5'
31031 3' -59.1 NC_006560.1 + 67003 0.66 0.803553
Target:  5'- gCGGcGUCGCGAgGGCGGaGGAggguaucgggccguCGCGGcGAGc -3'
miRNA:   3'- -GCC-CAGCGCU-CUGCC-CCU--------------GCGUC-UUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.