miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31056 5' -60.6 NC_006560.1 + 146584 0.66 0.736202
Target:  5'- -aGGCGCccccGGCgCCCgaggCCGGGcGCUUGCg -3'
miRNA:   3'- ggUCGUG----UCGgGGGa---GGUCC-UGGACG- -5'
31056 5' -60.6 NC_006560.1 + 57773 0.66 0.736202
Target:  5'- gCAGCACcacggAGCCCacgaaCC-CCAGcgcggcGGCCUGCg -3'
miRNA:   3'- gGUCGUG-----UCGGG-----GGaGGUC------CUGGACG- -5'
31056 5' -60.6 NC_006560.1 + 62553 0.66 0.736202
Target:  5'- gUAGUACAuGCCCgUCUUCAGGcCCcGCu -3'
miRNA:   3'- gGUCGUGU-CGGG-GGAGGUCCuGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 98145 0.66 0.736202
Target:  5'- gCCGacGCACAcGCCgCCCUCUucgcGGGCCUc- -3'
miRNA:   3'- -GGU--CGUGU-CGG-GGGAGGu---CCUGGAcg -5'
31056 5' -60.6 NC_006560.1 + 102358 0.66 0.736202
Target:  5'- uCCAGCucgccCGGCCCCC-CCGcGGCg-GCg -3'
miRNA:   3'- -GGUCGu----GUCGGGGGaGGUcCUGgaCG- -5'
31056 5' -60.6 NC_006560.1 + 92672 0.66 0.736202
Target:  5'- gUguGCGCGGCCuugaCCC-CCGGGGgCgggGCg -3'
miRNA:   3'- -GguCGUGUCGG----GGGaGGUCCUgGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 109767 0.66 0.736202
Target:  5'- gCC-GCGCAGCCgCC-CCGGGgugGCCUcgaaggGCg -3'
miRNA:   3'- -GGuCGUGUCGGgGGaGGUCC---UGGA------CG- -5'
31056 5' -60.6 NC_006560.1 + 115750 0.66 0.736202
Target:  5'- gCGGCGCAGCUgauccaCCCgaggcgCCcGGGCCgccGCa -3'
miRNA:   3'- gGUCGUGUCGG------GGGa-----GGuCCUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 139372 0.66 0.736202
Target:  5'- gCGGCGCAaacGCCCaCCcCCAGGAg--GCg -3'
miRNA:   3'- gGUCGUGU---CGGG-GGaGGUCCUggaCG- -5'
31056 5' -60.6 NC_006560.1 + 42530 0.66 0.736202
Target:  5'- gUCAGcCGCAGCCCCagcgccCCGGGGUC-GCg -3'
miRNA:   3'- -GGUC-GUGUCGGGGga----GGUCCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 71823 0.66 0.735253
Target:  5'- cCCAGUGCcccGCCCacgacuuCUUCgCGGGGCCUGg -3'
miRNA:   3'- -GGUCGUGu--CGGG-------GGAG-GUCCUGGACg -5'
31056 5' -60.6 NC_006560.1 + 125202 0.66 0.726669
Target:  5'- gCGGUGCccGGCCCUCgaCCGGGcCCUGg -3'
miRNA:   3'- gGUCGUG--UCGGGGGa-GGUCCuGGACg -5'
31056 5' -60.6 NC_006560.1 + 85922 0.66 0.726669
Target:  5'- gCCAGCgcgGCGGCCgCCgCCGaGACC-GCg -3'
miRNA:   3'- -GGUCG---UGUCGGgGGaGGUcCUGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 117521 0.66 0.726669
Target:  5'- gCCuGCcUGGCCgCCUCCGGGguGCC-GCu -3'
miRNA:   3'- -GGuCGuGUCGGgGGAGGUCC--UGGaCG- -5'
31056 5' -60.6 NC_006560.1 + 130437 0.66 0.726669
Target:  5'- gCGGCGCGccccucuucGUCCCCgcgcgcgucggCCGGGACCcccGCa -3'
miRNA:   3'- gGUCGUGU---------CGGGGGa----------GGUCCUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 7947 0.66 0.726669
Target:  5'- gCGGCGCuGGCgCCCCgcgUCC-GGACCcaccgGCa -3'
miRNA:   3'- gGUCGUG-UCG-GGGG---AGGuCCUGGa----CG- -5'
31056 5' -60.6 NC_006560.1 + 22479 0.66 0.726669
Target:  5'- cCCgAGCgcgacGCGGCCCCCgCCGGcGCCgccGCc -3'
miRNA:   3'- -GG-UCG-----UGUCGGGGGaGGUCcUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 35182 0.66 0.726669
Target:  5'- cCCGGgGCcccGCCCCgggggcgCCGGGGCCcggGCg -3'
miRNA:   3'- -GGUCgUGu--CGGGGga-----GGUCCUGGa--CG- -5'
31056 5' -60.6 NC_006560.1 + 70114 0.66 0.726669
Target:  5'- cCCAGCuGCcccccguGCCCCCgCCGGaGguggccacgaGCCUGCu -3'
miRNA:   3'- -GGUCG-UGu------CGGGGGaGGUC-C----------UGGACG- -5'
31056 5' -60.6 NC_006560.1 + 119581 0.66 0.726669
Target:  5'- aCAGCGCccGGCCCCgcccugCUCCccggcGGGGCCcgaggGCc -3'
miRNA:   3'- gGUCGUG--UCGGGG------GAGG-----UCCUGGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.