miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31057 3' -64 NC_006560.1 + 93085 0.66 0.60193
Target:  5'- --aGGGCCggcgccacggacgacCcGUUUGGcGaCGCCCCCCCc -3'
miRNA:   3'- ggaCCCGG---------------GaCAAGCC-C-GUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 32689 0.66 0.598095
Target:  5'- --aGGGCCggGgcCGGGgGCUCCgCCCg -3'
miRNA:   3'- ggaCCCGGgaCaaGCCCgUGGGG-GGG- -5'
31057 3' -64 NC_006560.1 + 71854 0.66 0.598095
Target:  5'- gCCUGGGCCCgg--CGGcCGCUgucguacaCCCUCg -3'
miRNA:   3'- -GGACCCGGGacaaGCCcGUGG--------GGGGG- -5'
31057 3' -64 NC_006560.1 + 79106 0.66 0.598095
Target:  5'- gCUGGcGUCCgacgacgCGGGagACCCCCCg -3'
miRNA:   3'- gGACC-CGGGacaa---GCCCg-UGGGGGGg -5'
31057 3' -64 NC_006560.1 + 93502 0.66 0.598095
Target:  5'- gCCUGacucGGCCCcucgcucCGGGCcgccggACCCCCCg -3'
miRNA:   3'- -GGAC----CCGGGacaa---GCCCG------UGGGGGGg -5'
31057 3' -64 NC_006560.1 + 100034 0.66 0.598095
Target:  5'- --cGGGCCgCggcucgcCGGGCcccGCCCCCCa -3'
miRNA:   3'- ggaCCCGG-Gacaa---GCCCG---UGGGGGGg -5'
31057 3' -64 NC_006560.1 + 1367 0.66 0.598095
Target:  5'- cCCcGcGGCCCgcac--GGCGCCCCUCCc -3'
miRNA:   3'- -GGaC-CCGGGacaagcCCGUGGGGGGG- -5'
31057 3' -64 NC_006560.1 + 116443 0.66 0.595222
Target:  5'- cCCgggGGGCUCgcaGUgguagaagaggagcUCGGGgGCCgcgaCCCCCg -3'
miRNA:   3'- -GGa--CCCGGGa--CA--------------AGCCCgUGG----GGGGG- -5'
31057 3' -64 NC_006560.1 + 1525 0.66 0.588525
Target:  5'- --cGGGCCC----CGGGCGCgCgCCCg -3'
miRNA:   3'- ggaCCCGGGacaaGCCCGUGgGgGGG- -5'
31057 3' -64 NC_006560.1 + 36208 0.66 0.588525
Target:  5'- gCCgGGGUCCag--CGGGC-CCCacgCCCCu -3'
miRNA:   3'- -GGaCCCGGGacaaGCCCGuGGG---GGGG- -5'
31057 3' -64 NC_006560.1 + 94623 0.66 0.588525
Target:  5'- gCUGcGGUUCUGgcuggcgUCGGGCgACCgCgCCCa -3'
miRNA:   3'- gGAC-CCGGGACa------AGCCCG-UGGgG-GGG- -5'
31057 3' -64 NC_006560.1 + 99363 0.66 0.588525
Target:  5'- gCUGGGCguaCUGgggCGGGgGCgCCCgCg -3'
miRNA:   3'- gGACCCGg--GACaa-GCCCgUGgGGGgG- -5'
31057 3' -64 NC_006560.1 + 139069 0.66 0.588525
Target:  5'- gCC-GGGCCCgGg--GGcGCGCCCUgCCg -3'
miRNA:   3'- -GGaCCCGGGaCaagCC-CGUGGGGgGG- -5'
31057 3' -64 NC_006560.1 + 74804 0.66 0.588525
Target:  5'- --cGGGaCCUGUUCcccgcGGCGCCCgagacgCCCCu -3'
miRNA:   3'- ggaCCCgGGACAAGc----CCGUGGG------GGGG- -5'
31057 3' -64 NC_006560.1 + 106608 0.66 0.588525
Target:  5'- uCCggcGGGCCCUGUUcuacgccaCGGcgguccugcgcGCGCCCgCCg -3'
miRNA:   3'- -GGa--CCCGGGACAA--------GCC-----------CGUGGGgGGg -5'
31057 3' -64 NC_006560.1 + 131668 0.66 0.578983
Target:  5'- gCCggcGaGGCCCUGg-CGGGCggggggcuGCUCCgCCCg -3'
miRNA:   3'- -GGa--C-CCGGGACaaGCCCG--------UGGGG-GGG- -5'
31057 3' -64 NC_006560.1 + 63628 0.66 0.578983
Target:  5'- --aGGccacGUCCUGgaUGGGCACCgCCUCCc -3'
miRNA:   3'- ggaCC----CGGGACaaGCCCGUGG-GGGGG- -5'
31057 3' -64 NC_006560.1 + 122600 0.66 0.572323
Target:  5'- cCCUccGGGCCCggccucucgcccacCGGGCugACCCgCCCg -3'
miRNA:   3'- -GGA--CCCGGGacaa----------GCCCG--UGGGgGGG- -5'
31057 3' -64 NC_006560.1 + 99462 0.66 0.569474
Target:  5'- cCCcGGGCgCCggcgccGgaCGGGCGCgCCgCCCg -3'
miRNA:   3'- -GGaCCCG-GGa-----CaaGCCCGUGgGG-GGG- -5'
31057 3' -64 NC_006560.1 + 134288 0.66 0.569474
Target:  5'- aCCgucGCCgaGUccaUCaGGUGCCCCCCCg -3'
miRNA:   3'- -GGaccCGGgaCA---AGcCCGUGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.