miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31058 3' -66.3 NC_006560.1 + 13445 0.66 0.466725
Target:  5'- -cGCUGCGGCagGCGCGcuccaGGaCGGCGuAGUa -3'
miRNA:   3'- guCGGCGCCGg-CGUGC-----CC-GCCGC-UCA- -5'
31058 3' -66.3 NC_006560.1 + 4145 0.66 0.466725
Target:  5'- gUAGCgGCGGCUcaugGcCACGgcGGCGGCGGcGUg -3'
miRNA:   3'- -GUCGgCGCCGG----C-GUGC--CCGCCGCU-CA- -5'
31058 3' -66.3 NC_006560.1 + 71354 0.66 0.466725
Target:  5'- gGGCgGCGGgCGgcggaaacaccaCACGGGCGGgcCGGGg -3'
miRNA:   3'- gUCGgCGCCgGC------------GUGCCCGCC--GCUCa -5'
31058 3' -66.3 NC_006560.1 + 119084 0.66 0.466725
Target:  5'- -cGCgGCGGCCGUccugucguuccUGGGCGaGCGGGc -3'
miRNA:   3'- guCGgCGCCGGCGu----------GCCCGC-CGCUCa -5'
31058 3' -66.3 NC_006560.1 + 126834 0.66 0.466725
Target:  5'- uGGCCacggacaCGGCCGC-CGuGGCGGUGcAGa -3'
miRNA:   3'- gUCGGc------GCCGGCGuGC-CCGCCGC-UCa -5'
31058 3' -66.3 NC_006560.1 + 2199 0.66 0.466725
Target:  5'- -cGCgCGCGGCCGCGCGGucCaGCGccaGGUa -3'
miRNA:   3'- guCG-GCGCCGGCGUGCCc-GcCGC---UCA- -5'
31058 3' -66.3 NC_006560.1 + 40870 0.66 0.466725
Target:  5'- gAGCCcCGaGCCGgGC-GGCGGCGAc- -3'
miRNA:   3'- gUCGGcGC-CGGCgUGcCCGCCGCUca -5'
31058 3' -66.3 NC_006560.1 + 135599 0.66 0.466725
Target:  5'- -uGCCcCGGCCGCagugguuccgggACGuGGCGGCGcuGGa -3'
miRNA:   3'- guCGGcGCCGGCG------------UGC-CCGCCGC--UCa -5'
31058 3' -66.3 NC_006560.1 + 102773 0.66 0.466725
Target:  5'- gGGCuCGCGGCaa-GgGGGgGGUGGGUg -3'
miRNA:   3'- gUCG-GCGCCGgcgUgCCCgCCGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 13030 0.66 0.458021
Target:  5'- gGGCCGCGGCgGCA-GGccguCGGgGGGa -3'
miRNA:   3'- gUCGGCGCCGgCGUgCCc---GCCgCUCa -5'
31058 3' -66.3 NC_006560.1 + 48582 0.66 0.458021
Target:  5'- cCAGCaCGCGGCagcuGCACcgccaGGCGGCGc-- -3'
miRNA:   3'- -GUCG-GCGCCGg---CGUGc----CCGCCGCuca -5'
31058 3' -66.3 NC_006560.1 + 57030 0.66 0.458021
Target:  5'- gCAGgCGUGGgCGCccaggaGCgGGGUGGUGAGg -3'
miRNA:   3'- -GUCgGCGCCgGCG------UG-CCCGCCGCUCa -5'
31058 3' -66.3 NC_006560.1 + 125164 0.66 0.458021
Target:  5'- gCGGUguggGCGGaCGCGCGGGCcGGCGGc- -3'
miRNA:   3'- -GUCGg---CGCCgGCGUGCCCG-CCGCUca -5'
31058 3' -66.3 NC_006560.1 + 28954 0.66 0.458021
Target:  5'- -cGUCGgGGCCGCcccaACgGGGCGGgGAu- -3'
miRNA:   3'- guCGGCgCCGGCG----UG-CCCGCCgCUca -5'
31058 3' -66.3 NC_006560.1 + 42628 0.66 0.458021
Target:  5'- cCAGUCGUcGCgCGC-CaGGGCGGCGAa- -3'
miRNA:   3'- -GUCGGCGcCG-GCGuG-CCCGCCGCUca -5'
31058 3' -66.3 NC_006560.1 + 47443 0.66 0.458021
Target:  5'- gCGGCCGUGGgC-CGCGuGGCGGCc--- -3'
miRNA:   3'- -GUCGGCGCCgGcGUGC-CCGCCGcuca -5'
31058 3' -66.3 NC_006560.1 + 109764 0.66 0.458021
Target:  5'- uCGGCCGCGcaGCCGCcccgGGGUGGCc--- -3'
miRNA:   3'- -GUCGGCGC--CGGCGug--CCCGCCGcuca -5'
31058 3' -66.3 NC_006560.1 + 146291 0.66 0.458021
Target:  5'- -cGCCGCGGggGCGCGGucggcguccacGUGGUGGGUc -3'
miRNA:   3'- guCGGCGCCggCGUGCC-----------CGCCGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 58116 0.66 0.457156
Target:  5'- uCGGgUGCGGCCGCcgagaacAgGGGCccgcggaggaugGGCGGGUc -3'
miRNA:   3'- -GUCgGCGCCGGCG-------UgCCCG------------CCGCUCA- -5'
31058 3' -66.3 NC_006560.1 + 51863 0.66 0.457156
Target:  5'- gGGgCGCGGCgcguccgCGCuCGGGCcccgGGCGGGg -3'
miRNA:   3'- gUCgGCGCCG-------GCGuGCCCG----CCGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.