miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31065 3' -55.5 NC_006560.1 + 149922 0.66 0.917894
Target:  5'- gGCCGgGCGCGGCgUCgGuggccGCAc---- -3'
miRNA:   3'- -CGGCgCGCGCCGgAGgCu----UGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 75233 0.66 0.917894
Target:  5'- nGgCGCGCGCGGgCCUggCCGcguGCGAg--- -3'
miRNA:   3'- -CgGCGCGCGCC-GGA--GGCu--UGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 76750 0.66 0.917894
Target:  5'- aGCUGUGCGC--CCUCCGGACc----- -3'
miRNA:   3'- -CGGCGCGCGccGGAGGCUUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 3278 0.66 0.917894
Target:  5'- cGCCGCGgGggucgGGCCcgCCGGGCGGg--- -3'
miRNA:   3'- -CGGCGCgCg----CCGGa-GGCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 57753 0.66 0.917894
Target:  5'- cGCgGCGCGCGcGUCggCGGGCAGc--- -3'
miRNA:   3'- -CGgCGCGCGC-CGGagGCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 112066 0.66 0.917894
Target:  5'- cGCCGCGUGCuccGGCUgUCCcugGAGCAGg--- -3'
miRNA:   3'- -CGGCGCGCG---CCGG-AGG---CUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 130080 0.66 0.917894
Target:  5'- cGCCGCGCGgGGgCgccaUGGGCGAg--- -3'
miRNA:   3'- -CGGCGCGCgCCgGag--GCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 203 0.66 0.911996
Target:  5'- uCCGCGCGCGcGCCgCCGcGgGAg--- -3'
miRNA:   3'- cGGCGCGCGC-CGGaGGCuUgUUauuu -5'
31065 3' -55.5 NC_006560.1 + 115467 0.66 0.911996
Target:  5'- gGUgGCGCGCGGCaUCCGcGCc----- -3'
miRNA:   3'- -CGgCGCGCGCCGgAGGCuUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 133552 0.66 0.911996
Target:  5'- gGCgGCGCGCGGCgUggCGGACGu---- -3'
miRNA:   3'- -CGgCGCGCGCCGgAg-GCUUGUuauuu -5'
31065 3' -55.5 NC_006560.1 + 23407 0.66 0.911996
Target:  5'- cGCCGCGCagcgccgccugGCGGCCgcccucgccgCCGAccGCGGc--- -3'
miRNA:   3'- -CGGCGCG-----------CGCCGGa---------GGCU--UGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 150532 0.66 0.911996
Target:  5'- uCCGCGCGCGcGCCgCCGcGgGAg--- -3'
miRNA:   3'- cGGCGCGCGC-CGGaGGCuUgUUauuu -5'
31065 3' -55.5 NC_006560.1 + 74913 0.66 0.911996
Target:  5'- gGCCGuCGCGaCGGCCagccCCGAgaGCAcgGu- -3'
miRNA:   3'- -CGGC-GCGC-GCCGGa---GGCU--UGUuaUuu -5'
31065 3' -55.5 NC_006560.1 + 94281 0.66 0.911996
Target:  5'- cCCGUGCGCGGUCUgcuUCGAGgAGc--- -3'
miRNA:   3'- cGGCGCGCGCCGGA---GGCUUgUUauuu -5'
31065 3' -55.5 NC_006560.1 + 25234 0.66 0.905856
Target:  5'- uCUGCGCGCGcGCCcugcCCGAGCc----- -3'
miRNA:   3'- cGGCGCGCGC-CGGa---GGCUUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 33344 0.66 0.905856
Target:  5'- uGCCGC-CGCGGCC-CCGcGGCc----- -3'
miRNA:   3'- -CGGCGcGCGCCGGaGGC-UUGuuauuu -5'
31065 3' -55.5 NC_006560.1 + 1479 0.66 0.905856
Target:  5'- cGCCccaucggagGCGCGCGGCCcacgCCG-GCGGg--- -3'
miRNA:   3'- -CGG---------CGCGCGCCGGa---GGCuUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 34648 0.66 0.905856
Target:  5'- aCCGgggaCGCGCGGCggCCGGGCGGg--- -3'
miRNA:   3'- cGGC----GCGCGCCGgaGGCUUGUUauuu -5'
31065 3' -55.5 NC_006560.1 + 46984 0.66 0.905856
Target:  5'- cCCGCGCGCGucuCCUUCGAGgAGc--- -3'
miRNA:   3'- cGGCGCGCGCc--GGAGGCUUgUUauuu -5'
31065 3' -55.5 NC_006560.1 + 22630 0.66 0.905856
Target:  5'- cGCCGCGgGCcGCCgCCGAgACGGg--- -3'
miRNA:   3'- -CGGCGCgCGcCGGaGGCU-UGUUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.