miRNA display CGI


Results 1 - 20 of 721 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31066 3' -70.1 NC_006560.1 + 14119 0.66 0.355553
Target:  5'- cCCCGCGCCcauggcgGCCAgGgucagcgcgcagaGGCCCCCgaucaccaggggcagGGCGc -3'
miRNA:   3'- cGGGCGCGG-------CGGUgC-------------CCGGGGG---------------CCGC- -5'
31066 3' -70.1 NC_006560.1 + 1928 0.66 0.354128
Target:  5'- cGCCgGCucGCCGUC-CGGGUCCCagucCGGgGu -3'
miRNA:   3'- -CGGgCG--CGGCGGuGCCCGGGG----GCCgC- -5'
31066 3' -70.1 NC_006560.1 + 27089 0.66 0.354128
Target:  5'- gGCCUGgGgaCCGaaGCGGGCCucgcgaCCCGGCc -3'
miRNA:   3'- -CGGGCgC--GGCggUGCCCGG------GGGCCGc -5'
31066 3' -70.1 NC_006560.1 + 43608 0.66 0.354128
Target:  5'- cUgCGCGCUGCCGuaguaGGCCCgCCGGUa -3'
miRNA:   3'- cGgGCGCGGCGGUgc---CCGGG-GGCCGc -5'
31066 3' -70.1 NC_006560.1 + 122436 0.66 0.354128
Target:  5'- gGCUCGCGUC-CCACauccGGUCCgguggCCGGCGg -3'
miRNA:   3'- -CGGGCGCGGcGGUGc---CCGGG-----GGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 130524 0.66 0.354128
Target:  5'- gGCCgGUGgCGCCGCGcGGCgCCgcgcugGGCGu -3'
miRNA:   3'- -CGGgCGCgGCGGUGC-CCGgGGg-----CCGC- -5'
31066 3' -70.1 NC_006560.1 + 148534 0.66 0.354128
Target:  5'- uGgCUGgGgUGCCgAUGGuGUCCCCGGCGu -3'
miRNA:   3'- -CgGGCgCgGCGG-UGCC-CGGGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 39980 0.66 0.354128
Target:  5'- uGCgUGUGCuCGCCGCGa--CUCCGGCGa -3'
miRNA:   3'- -CGgGCGCG-GCGGUGCccgGGGGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 77385 0.66 0.354128
Target:  5'- aGCUCgggGCGCUGCUgAUGcGGCCCgaGGCGg -3'
miRNA:   3'- -CGGG---CGCGGCGG-UGC-CCGGGggCCGC- -5'
31066 3' -70.1 NC_006560.1 + 79652 0.66 0.354128
Target:  5'- aCCCGCaaCGUC-CGGcGCCCCCcgcucGGCGc -3'
miRNA:   3'- cGGGCGcgGCGGuGCC-CGGGGG-----CCGC- -5'
31066 3' -70.1 NC_006560.1 + 139349 0.66 0.354128
Target:  5'- gGCCCGCGCgG--GgGGGCCgUCGuGCGg -3'
miRNA:   3'- -CGGGCGCGgCggUgCCCGGgGGC-CGC- -5'
31066 3' -70.1 NC_006560.1 + 86646 0.66 0.354128
Target:  5'- gGCCCggcuccagGC-CCGCCACGGcGUCCgcgCCGaGCGa -3'
miRNA:   3'- -CGGG--------CGcGGCGGUGCC-CGGG---GGC-CGC- -5'
31066 3' -70.1 NC_006560.1 + 53561 0.66 0.354128
Target:  5'- cGCCCGCG-UGCgCGCGucGCgCCCgGGCGc -3'
miRNA:   3'- -CGGGCGCgGCG-GUGCc-CG-GGGgCCGC- -5'
31066 3' -70.1 NC_006560.1 + 42814 0.66 0.354128
Target:  5'- cCCCGCGCCcCCgucucccucGCcGGCCUUgGGCGg -3'
miRNA:   3'- cGGGCGCGGcGG---------UGcCCGGGGgCCGC- -5'
31066 3' -70.1 NC_006560.1 + 10307 0.66 0.354128
Target:  5'- cGCCgGggacCGCCGCCGCGacccgcGGCCCgaCGGUc -3'
miRNA:   3'- -CGGgC----GCGGCGGUGC------CCGGGg-GCCGc -5'
31066 3' -70.1 NC_006560.1 + 121962 0.66 0.354128
Target:  5'- cGCCgGCGCCugGCCgagacgcaccuGCGGGCCg-CGGUGu -3'
miRNA:   3'- -CGGgCGCGG--CGG-----------UGCCCGGggGCCGC- -5'
31066 3' -70.1 NC_006560.1 + 105853 0.66 0.354128
Target:  5'- cGUgCGCGCgCGCUACGGG-CUgCGGUu -3'
miRNA:   3'- -CGgGCGCG-GCGGUGCCCgGGgGCCGc -5'
31066 3' -70.1 NC_006560.1 + 59869 0.66 0.353417
Target:  5'- gGCCCugaGgGCC-CCGCGGGCugcuucaCCCCGauaGCGg -3'
miRNA:   3'- -CGGG---CgCGGcGGUGCCCG-------GGGGC---CGC- -5'
31066 3' -70.1 NC_006560.1 + 9710 0.66 0.353417
Target:  5'- -gCCGCGgUGCUgacgacgACGuGGCCCCaGGCGu -3'
miRNA:   3'- cgGGCGCgGCGG-------UGC-CCGGGGgCCGC- -5'
31066 3' -70.1 NC_006560.1 + 38935 0.66 0.353417
Target:  5'- gGUCCguGCGCCGCCAgCGucucccaGGagaCCCGGCGc -3'
miRNA:   3'- -CGGG--CGCGGCGGU-GC-------CCgg-GGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.