miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31066 5' -58.1 NC_006560.1 + 60912 0.66 0.839123
Target:  5'- cUCGU-CGcGGAGCaCCGCGAgUACGUGc -3'
miRNA:   3'- aAGCAgGC-CCUCGaGGUGCU-GUGCAC- -5'
31066 5' -58.1 NC_006560.1 + 35602 0.66 0.839123
Target:  5'- cUCGcugCCGGGAaucCUCCGCGcCGCGg- -3'
miRNA:   3'- aAGCa--GGCCCUc--GAGGUGCuGUGCac -5'
31066 5' -58.1 NC_006560.1 + 135021 0.66 0.839123
Target:  5'- --gGcCCGGaGGGCcCCGCGcCACGUGu -3'
miRNA:   3'- aagCaGGCC-CUCGaGGUGCuGUGCAC- -5'
31066 5' -58.1 NC_006560.1 + 41290 0.66 0.839123
Target:  5'- -aCGUCCGGGcggucgcgcGGCUgCCcCGGC-CGUGu -3'
miRNA:   3'- aaGCAGGCCC---------UCGA-GGuGCUGuGCAC- -5'
31066 5' -58.1 NC_006560.1 + 107997 0.66 0.835878
Target:  5'- gUCGgCCGGGucgucgccgcgcuGCgccgCCGCGACGCGg- -3'
miRNA:   3'- aAGCaGGCCCu------------CGa---GGUGCUGUGCac -5'
31066 5' -58.1 NC_006560.1 + 59364 0.66 0.830957
Target:  5'- -cCGUCuCGGGGaCgucagCCAUGGCugGUGg -3'
miRNA:   3'- aaGCAG-GCCCUcGa----GGUGCUGugCAC- -5'
31066 5' -58.1 NC_006560.1 + 101782 0.66 0.830957
Target:  5'- gUCG-CCGGGGGCggcggCAgGACGcCGUGg -3'
miRNA:   3'- aAGCaGGCCCUCGag---GUgCUGU-GCAC- -5'
31066 5' -58.1 NC_006560.1 + 3174 0.66 0.822614
Target:  5'- gUgGUCCGaGAGCUCgGCGACgACGc- -3'
miRNA:   3'- aAgCAGGCcCUCGAGgUGCUG-UGCac -5'
31066 5' -58.1 NC_006560.1 + 125308 0.66 0.814103
Target:  5'- cUCGUCU-GGAGCUCCGgaGAcCugGUGc -3'
miRNA:   3'- aAGCAGGcCCUCGAGGUg-CU-GugCAC- -5'
31066 5' -58.1 NC_006560.1 + 112512 0.66 0.80543
Target:  5'- -gCGgggCCuGGAGCUCagcgugggGCGGCACGUGc -3'
miRNA:   3'- aaGCa--GGcCCUCGAGg-------UGCUGUGCAC- -5'
31066 5' -58.1 NC_006560.1 + 142075 0.66 0.80543
Target:  5'- -cCGaggCCGGGcgGGCggggCCGCGGCGCGg- -3'
miRNA:   3'- aaGCa--GGCCC--UCGa---GGUGCUGUGCac -5'
31066 5' -58.1 NC_006560.1 + 94786 0.66 0.796605
Target:  5'- -gCGUUCGGcGAGCgCCugGCGGCGCGg- -3'
miRNA:   3'- aaGCAGGCC-CUCGaGG--UGCUGUGCac -5'
31066 5' -58.1 NC_006560.1 + 105024 0.66 0.796605
Target:  5'- -gCGgaaCGGGcGCUCCGCGGCGCc-- -3'
miRNA:   3'- aaGCag-GCCCuCGAGGUGCUGUGcac -5'
31066 5' -58.1 NC_006560.1 + 11666 0.67 0.787634
Target:  5'- gUCGcuUCCGGGGGCUCgGCGGuC-CGg- -3'
miRNA:   3'- aAGC--AGGCCCUCGAGgUGCU-GuGCac -5'
31066 5' -58.1 NC_006560.1 + 11627 0.67 0.787634
Target:  5'- gUCGcuUCCGGGGGCUCgGCGGuC-CGg- -3'
miRNA:   3'- aAGC--AGGCCCUCGAGgUGCU-GuGCac -5'
31066 5' -58.1 NC_006560.1 + 147100 0.67 0.778527
Target:  5'- gUCGgCgGGGGGCgggCgCGCGACGCGg- -3'
miRNA:   3'- aAGCaGgCCCUCGa--G-GUGCUGUGCac -5'
31066 5' -58.1 NC_006560.1 + 112223 0.67 0.778527
Target:  5'- -cCGcCCGccuucgggaGGAGUUCCugGAgACGUGg -3'
miRNA:   3'- aaGCaGGC---------CCUCGAGGugCUgUGCAC- -5'
31066 5' -58.1 NC_006560.1 + 146955 0.67 0.759938
Target:  5'- -gCGUcagggCCGGGGGCcgggCCugGGCGgGUGg -3'
miRNA:   3'- aaGCA-----GGCCCUCGa---GGugCUGUgCAC- -5'
31066 5' -58.1 NC_006560.1 + 17155 0.67 0.750474
Target:  5'- gUCGgaccgguacUUCGGGAGCaCCA-GGCACGUGa -3'
miRNA:   3'- aAGC---------AGGCCCUCGaGGUgCUGUGCAC- -5'
31066 5' -58.1 NC_006560.1 + 97352 0.67 0.750474
Target:  5'- -aCGUgCGGGAGCucgUCCGCGAgcagaCGCGg- -3'
miRNA:   3'- aaGCAgGCCCUCG---AGGUGCU-----GUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.