miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31069 5' -66.6 NC_006560.1 + 130815 0.66 0.473635
Target:  5'- --gGGCCaCGCGCagGCCgugACGGCGCgCg -3'
miRNA:   3'- cagCCGG-GCGCGg-CGGg--UGCCGUGgG- -5'
31069 5' -66.6 NC_006560.1 + 751 0.66 0.473635
Target:  5'- -gCGGCCC-CGUCcccccccCCCGCGGCGCg- -3'
miRNA:   3'- caGCCGGGcGCGGc------GGGUGCCGUGgg -5'
31069 5' -66.6 NC_006560.1 + 25071 0.66 0.473635
Target:  5'- -gCGGCC---GCCGCCgGCG-CGCCCg -3'
miRNA:   3'- caGCCGGgcgCGGCGGgUGCcGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 146702 0.66 0.473635
Target:  5'- aGUCuGGCCUGgGCCugGgCCugGGCcuggGCCUg -3'
miRNA:   3'- -CAG-CCGGGCgCGG--CgGGugCCG----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 31274 0.66 0.473635
Target:  5'- cGUCGGCUCcucggggcucCGCCGCuCCGCcucCGCCCg -3'
miRNA:   3'- -CAGCCGGGc---------GCGGCG-GGUGcc-GUGGG- -5'
31069 5' -66.6 NC_006560.1 + 55172 0.66 0.473635
Target:  5'- cGUC-GCCCG-GCCgacGCCCGgcgcggaccCGGCGCCUc -3'
miRNA:   3'- -CAGcCGGGCgCGG---CGGGU---------GCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 70420 0.66 0.473635
Target:  5'- -aCGacGCCaagCGCGCC-CUCACGGcCGCCCu -3'
miRNA:   3'- caGC--CGG---GCGCGGcGGGUGCC-GUGGG- -5'
31069 5' -66.6 NC_006560.1 + 99471 0.66 0.473635
Target:  5'- -cCGGCgCCggacgggcGCGCCGCCCGgCGGaguCCg -3'
miRNA:   3'- caGCCG-GG--------CGCGGCGGGU-GCCgu-GGg -5'
31069 5' -66.6 NC_006560.1 + 101925 0.66 0.473635
Target:  5'- -cCGGCCgCccuCGUCGCCgAUGGCGCgCg -3'
miRNA:   3'- caGCCGG-Gc--GCGGCGGgUGCCGUGgG- -5'
31069 5' -66.6 NC_006560.1 + 120290 0.66 0.473635
Target:  5'- cGUCGGCCCaCGCggacucggucaaCGCCCugugggacuCGGcCGCCg -3'
miRNA:   3'- -CAGCCGGGcGCG------------GCGGGu--------GCC-GUGGg -5'
31069 5' -66.6 NC_006560.1 + 125599 0.66 0.473635
Target:  5'- -cCGGUgCGCGUCGaCgCCGCGGUcuacgACCUg -3'
miRNA:   3'- caGCCGgGCGCGGC-G-GGUGCCG-----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 82593 0.66 0.473635
Target:  5'- -cCGGCCgCG-GCuCGCCCcgaGGC-CCCg -3'
miRNA:   3'- caGCCGG-GCgCG-GCGGGug-CCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 102441 0.66 0.473635
Target:  5'- cUCGGCCgcCGCgGCCGCcgucuCCAgGGCcUCCa -3'
miRNA:   3'- cAGCCGG--GCG-CGGCG-----GGUgCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 43410 0.66 0.472762
Target:  5'- gGUCaGCgCCGCGgCGCCgggggcgucggcgCGCGGCACg- -3'
miRNA:   3'- -CAGcCG-GGCGCgGCGG-------------GUGCCGUGgg -5'
31069 5' -66.6 NC_006560.1 + 119756 0.66 0.472762
Target:  5'- -aCGGCCUgacggggGCGCUGUgCCgggugGCGGUGCCCc -3'
miRNA:   3'- caGCCGGG-------CGCGGCG-GG-----UGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 143302 0.66 0.472762
Target:  5'- -cCGGCC---GCCGCCCcacccccccccccGCGGCgACCCc -3'
miRNA:   3'- caGCCGGgcgCGGCGGG-------------UGCCG-UGGG- -5'
31069 5' -66.6 NC_006560.1 + 4559 0.66 0.47189
Target:  5'- cUCGGCCCcgggccagggcuCGCCGCUgGCGuaGCCg -3'
miRNA:   3'- cAGCCGGGc-----------GCGGCGGgUGCcgUGGg -5'
31069 5' -66.6 NC_006560.1 + 47970 0.66 0.471019
Target:  5'- cUCGGCUCGCuuuccgucccucccGucucgccgcccCCGCCCGcCGGCcCCCg -3'
miRNA:   3'- cAGCCGGGCG--------------C-----------GGCGGGU-GCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 24535 0.66 0.471019
Target:  5'- --gGGCCCGacacgGCCGCCUgggcCGGCAacuggaccgggcccCCCg -3'
miRNA:   3'- cagCCGGGCg----CGGCGGGu---GCCGU--------------GGG- -5'
31069 5' -66.6 NC_006560.1 + 103824 0.66 0.470149
Target:  5'- -aCGGCCUGggcaagaccaccacCGCCGCCgCguuugcgGCGGCGCUg -3'
miRNA:   3'- caGCCGGGC--------------GCGGCGG-G-------UGCCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.