miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31079 3' -66 NC_006560.1 + 98432 0.66 0.498535
Target:  5'- -cGGCgcGCCGcUGGcgGGCgGCGGCGa -3'
miRNA:   3'- ccCCGa-CGGCcACCa-CCGgCGCCGCg -5'
31079 3' -66 NC_006560.1 + 32326 0.66 0.498535
Target:  5'- aGGGGacagagGcCCGGccagGG-GGCCGgGGgGCa -3'
miRNA:   3'- -CCCCga----C-GGCCa---CCaCCGGCgCCgCG- -5'
31079 3' -66 NC_006560.1 + 58677 0.66 0.498535
Target:  5'- -uGGgaGUCGGcGGUGcucGgCGCGGCGCc -3'
miRNA:   3'- ccCCgaCGGCCaCCAC---CgGCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 78414 0.66 0.498535
Target:  5'- gGGGGCc-CCGGUcgucGUGGCC-CuGCGCa -3'
miRNA:   3'- -CCCCGacGGCCAc---CACCGGcGcCGCG- -5'
31079 3' -66 NC_006560.1 + 88562 0.66 0.498535
Target:  5'- cGGGGCgcGCCuGaGGcGGCCGUcGUGCa -3'
miRNA:   3'- -CCCCGa-CGGcCaCCaCCGGCGcCGCG- -5'
31079 3' -66 NC_006560.1 + 106423 0.66 0.498535
Target:  5'- cGGGCgGCUGGccgcggaGGcGGUCGCGG-GCg -3'
miRNA:   3'- cCCCGaCGGCCa------CCaCCGGCGCCgCG- -5'
31079 3' -66 NC_006560.1 + 131431 0.66 0.498535
Target:  5'- cGGGCcGUCGcGgcgcUGGcccUGGCCGaGGCGCg -3'
miRNA:   3'- cCCCGaCGGC-C----ACC---ACCGGCgCCGCG- -5'
31079 3' -66 NC_006560.1 + 131612 0.66 0.498535
Target:  5'- aGGGCgccGCCGGcccGGcGGCgGuCGaGCGCg -3'
miRNA:   3'- cCCCGa--CGGCCa--CCaCCGgC-GC-CGCG- -5'
31079 3' -66 NC_006560.1 + 149154 0.66 0.498535
Target:  5'- cGGGGCgGCCcccaGG-GGcGGCgCGCGGgGa -3'
miRNA:   3'- -CCCCGaCGG----CCaCCaCCG-GCGCCgCg -5'
31079 3' -66 NC_006560.1 + 65337 0.66 0.494949
Target:  5'- gGGGGCcggcucGCCGGccccagccccgucGGcGGCgGCGGCGa -3'
miRNA:   3'- -CCCCGa-----CGGCCa------------CCaCCGgCGCCGCg -5'
31079 3' -66 NC_006560.1 + 133035 0.66 0.494949
Target:  5'- cGGGCcgaaagacggagaGCCGGUGGggGaGCaccaGCGGCGg -3'
miRNA:   3'- cCCCGa------------CGGCCACCa-C-CGg---CGCCGCg -5'
31079 3' -66 NC_006560.1 + 34561 0.66 0.489591
Target:  5'- gGGGGCgGCCGGgGGUGcGCgaCGgggagagacCGGCGg -3'
miRNA:   3'- -CCCCGaCGGCCaCCAC-CG--GC---------GCCGCg -5'
31079 3' -66 NC_006560.1 + 110345 0.66 0.489591
Target:  5'- uGGGGCggaCGGcGucuuucgccucGUGGCCGCcgggcaGGCGCg -3'
miRNA:   3'- -CCCCGacgGCCaC-----------CACCGGCG------CCGCG- -5'
31079 3' -66 NC_006560.1 + 131872 0.66 0.489591
Target:  5'- --cGCUGCgGGgcgcGGUCGCGGCGUa -3'
miRNA:   3'- cccCGACGgCCaccaCCGGCGCCGCG- -5'
31079 3' -66 NC_006560.1 + 144861 0.66 0.489591
Target:  5'- gGGGGCUGCCcgccgcccGcGUGGCCcUGaGCGCc -3'
miRNA:   3'- -CCCCGACGGcca-----C-CACCGGcGC-CGCG- -5'
31079 3' -66 NC_006560.1 + 16627 0.66 0.489591
Target:  5'- cGGGGCggguguacGCCGGgcGGcGGuuGC-GCGCc -3'
miRNA:   3'- -CCCCGa-------CGGCCa-CCaCCggCGcCGCG- -5'
31079 3' -66 NC_006560.1 + 19399 0.66 0.489591
Target:  5'- -cGGCacggGCCGGgcgaGUcGCCGCGGCGg -3'
miRNA:   3'- ccCCGa---CGGCCac--CAcCGGCGCCGCg -5'
31079 3' -66 NC_006560.1 + 33283 0.66 0.489591
Target:  5'- uGGGCgGCgGG-GGUugGGUCGCGGagGCc -3'
miRNA:   3'- cCCCGaCGgCCaCCA--CCGGCGCCg-CG- -5'
31079 3' -66 NC_006560.1 + 99908 0.66 0.489591
Target:  5'- cGGGGUucaUGUCGGccucgGGgcgcucGGgCGCGGCGg -3'
miRNA:   3'- -CCCCG---ACGGCCa----CCa-----CCgGCGCCGCg -5'
31079 3' -66 NC_006560.1 + 118526 0.66 0.489591
Target:  5'- gGGaGGCgcugGCCGGgggGGaccgccccggcUGGCUGUggagccGGCGCu -3'
miRNA:   3'- -CC-CCGa---CGGCCa--CC-----------ACCGGCG------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.