miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 3' -56.2 NC_006560.1 + 73603 0.66 0.908851
Target:  5'- --aGGAGGCCc----GGGCCGCCGCc -3'
miRNA:   3'- cagCUUCCGGcagaaCUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 66341 0.66 0.908851
Target:  5'- -gCGc-GGCC-UCguggGGGCCGCCGCAc -3'
miRNA:   3'- caGCuuCCGGcAGaa--CUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 64977 0.66 0.908851
Target:  5'- cUCGGcgGGGCCG------GCCGCCGCGg -3'
miRNA:   3'- cAGCU--UCCGGCagaacuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 83439 0.66 0.90763
Target:  5'- -cCGAGGGUCGgcgcggcggcggCgaGAGCUGCUGCAc -3'
miRNA:   3'- caGCUUCCGGCa-----------GaaCUUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 111431 0.66 0.902654
Target:  5'- -gCGAAGGCgGgcc---ACCGCCGCGa -3'
miRNA:   3'- caGCUUCCGgCagaacuUGGCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 36100 0.66 0.902654
Target:  5'- -cCGGcgGGGCCGcggCgggcaccgGGGCCGCCGCc -3'
miRNA:   3'- caGCU--UCCGGCa--Gaa------CUUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 39105 0.66 0.902654
Target:  5'- cUCGgcGGCCGcgcgCUccgagaUGGACCGCaGCAc -3'
miRNA:   3'- cAGCuuCCGGCa---GA------ACUUGGCGgCGU- -5'
31080 3' -56.2 NC_006560.1 + 75711 0.66 0.902654
Target:  5'- -cUGggGGCCcgcGUUcgGcGCCGCCGCc -3'
miRNA:   3'- caGCuuCCGG---CAGaaCuUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 119616 0.66 0.896223
Target:  5'- -cCGAGGGCCccgacggCggcgGGGCCGCgCGCAu -3'
miRNA:   3'- caGCUUCCGGca-----Gaa--CUUGGCG-GCGU- -5'
31080 3' -56.2 NC_006560.1 + 93678 0.66 0.896223
Target:  5'- cGUCGgcGGCgGacgacgccgcggUCUcgGAGCCGaCCGCGg -3'
miRNA:   3'- -CAGCuuCCGgC------------AGAa-CUUGGC-GGCGU- -5'
31080 3' -56.2 NC_006560.1 + 142362 0.66 0.896223
Target:  5'- cUCGggGGCCGg---GGGCgGCgGCc -3'
miRNA:   3'- cAGCuuCCGGCagaaCUUGgCGgCGu -5'
31080 3' -56.2 NC_006560.1 + 24648 0.66 0.896223
Target:  5'- cGUCGAguuccuGGGCCuG-CUggcGGCCGCCGCc -3'
miRNA:   3'- -CAGCU------UCCGG-CaGAac-UUGGCGGCGu -5'
31080 3' -56.2 NC_006560.1 + 131502 0.66 0.896223
Target:  5'- cGUCGucgcGGCCGUC--GGGCUGCgGCu -3'
miRNA:   3'- -CAGCuu--CCGGCAGaaCUUGGCGgCGu -5'
31080 3' -56.2 NC_006560.1 + 25957 0.66 0.889562
Target:  5'- -gCGAGGGCCG-CgggGGGCgaggGCCGCGg -3'
miRNA:   3'- caGCUUCCGGCaGaa-CUUGg---CGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 33638 0.66 0.889562
Target:  5'- -gCGggGGgCGcCggGGGCgGCCGCGg -3'
miRNA:   3'- caGCuuCCgGCaGaaCUUGgCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 13038 0.66 0.889562
Target:  5'- -gCGGcAGGCCGUCgggggGAugCGCaGCGg -3'
miRNA:   3'- caGCU-UCCGGCAGaa---CUugGCGgCGU- -5'
31080 3' -56.2 NC_006560.1 + 34789 0.66 0.889562
Target:  5'- uGUCGggGGCUG-CggGGuuCCGCgGCGc -3'
miRNA:   3'- -CAGCuuCCGGCaGaaCUu-GGCGgCGU- -5'
31080 3' -56.2 NC_006560.1 + 120889 0.66 0.889562
Target:  5'- gGUCGAcccGGGCCG-CgccGAACCagccCCGCAg -3'
miRNA:   3'- -CAGCU---UCCGGCaGaa-CUUGGc---GGCGU- -5'
31080 3' -56.2 NC_006560.1 + 109069 0.66 0.889562
Target:  5'- cGUCGcucAGGCCGcgcCUgcgGAGCuCGCUGCGc -3'
miRNA:   3'- -CAGCu--UCCGGCa--GAa--CUUG-GCGGCGU- -5'
31080 3' -56.2 NC_006560.1 + 23551 0.66 0.882674
Target:  5'- cGUCGAGGGCUucggCggcGAccucGCCGCCGUg -3'
miRNA:   3'- -CAGCUUCCGGca--Gaa-CU----UGGCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.