miRNA display CGI


Results 1 - 20 of 547 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 5' -65.6 NC_006560.1 + 124337 0.66 0.511448
Target:  5'- cUCCGCGG-GuuGCuGCGG-GGCGUCCGg -3'
miRNA:   3'- -AGGCGCCgCucCG-UGCCgUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 12791 0.66 0.511448
Target:  5'- aCCGCGGgGAGGgAcccgucggcCGGgGGCcGCUCGu -3'
miRNA:   3'- aGGCGCCgCUCCgU---------GCCgUCG-CGGGC- -5'
31080 5' -65.6 NC_006560.1 + 15170 0.66 0.511448
Target:  5'- cUUCGCGGUcGGGauCACgGGCGucGCGCCCu -3'
miRNA:   3'- -AGGCGCCGcUCC--GUG-CCGU--CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 62447 0.66 0.511448
Target:  5'- --gGCGagaGCGGGGcCGCGGCgcgGGCGCUCa -3'
miRNA:   3'- aggCGC---CGCUCC-GUGCCG---UCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 4408 0.66 0.511448
Target:  5'- -gCGCGGCGucGCcCaGCucgGGCGCCCa -3'
miRNA:   3'- agGCGCCGCucCGuGcCG---UCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 34352 0.66 0.511448
Target:  5'- aCCGgguUGGgGAGG-AgGGgGGCGCCCGc -3'
miRNA:   3'- aGGC---GCCgCUCCgUgCCgUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 65115 0.66 0.511448
Target:  5'- cCCGgGGCGGGcCGCGGgGGCGgCg- -3'
miRNA:   3'- aGGCgCCGCUCcGUGCCgUCGCgGgc -5'
31080 5' -65.6 NC_006560.1 + 149985 0.66 0.510536
Target:  5'- gUCCGCGcuacCGGGGCcgcgcucgggaccGCgGGCGGCGCaCCc -3'
miRNA:   3'- -AGGCGCc---GCUCCG-------------UG-CCGUCGCG-GGc -5'
31080 5' -65.6 NC_006560.1 + 109903 0.66 0.505983
Target:  5'- aCCGCGGgauCGuGGaCGagaacgacccggaccCGGCcGCGCCCGg -3'
miRNA:   3'- aGGCGCC---GCuCC-GU---------------GCCGuCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 105500 0.66 0.505983
Target:  5'- gUCCGCGGcCGcgcuccugcgcuccaGGGcCugGGUGacgcacGCGCCCGu -3'
miRNA:   3'- -AGGCGCC-GC---------------UCC-GugCCGU------CGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 25129 0.66 0.502354
Target:  5'- -gCGCGcGCuGGGGCcUGGguGCGCCg- -3'
miRNA:   3'- agGCGC-CG-CUCCGuGCCguCGCGGgc -5'
31080 5' -65.6 NC_006560.1 + 129596 0.66 0.502354
Target:  5'- --gGCGGUGcGGCGCGuGaCGGaCGCCCu -3'
miRNA:   3'- aggCGCCGCuCCGUGC-C-GUC-GCGGGc -5'
31080 5' -65.6 NC_006560.1 + 105036 0.66 0.502354
Target:  5'- cUCCGCGGCGccGcCGCGGggggGGUGCUCu -3'
miRNA:   3'- -AGGCGCCGCucC-GUGCCg---UCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 117837 0.66 0.502354
Target:  5'- cCUGCGcGUGAgcugggGGCccACGGCcagcuGCGCCCGc -3'
miRNA:   3'- aGGCGC-CGCU------CCG--UGCCGu----CGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 120088 0.66 0.501448
Target:  5'- cCCGCGGaggucccCGGGGaccccuCGGCGugcuGCGCCCu -3'
miRNA:   3'- aGGCGCC-------GCUCCgu----GCCGU----CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 124573 0.66 0.496931
Target:  5'- gCUGCGGCgGGGGCugacgACGGCcucgacgcucaagugGGgGCCCc -3'
miRNA:   3'- aGGCGCCG-CUCCG-----UGCCG---------------UCgCGGGc -5'
31080 5' -65.6 NC_006560.1 + 32589 0.66 0.49333
Target:  5'- cCCGCaGGgacaCGGGGgGCGGgGGCuGCCCc -3'
miRNA:   3'- aGGCG-CC----GCUCCgUGCCgUCG-CGGGc -5'
31080 5' -65.6 NC_006560.1 + 113769 0.66 0.49333
Target:  5'- cCCGCGGCGAGaaCACGcucacGUAcGCGCUCa -3'
miRNA:   3'- aGGCGCCGCUCc-GUGC-----CGU-CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 99634 0.66 0.49333
Target:  5'- --nGCGGCGAuGGCgccgaccagcGCGGCGaucuGCGCCUc -3'
miRNA:   3'- aggCGCCGCU-CCG----------UGCCGU----CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 93659 0.66 0.49333
Target:  5'- gCCGCGGCuucggcuccGGCGuCGGCGGCGgaCGa -3'
miRNA:   3'- aGGCGCCGcu-------CCGU-GCCGUCGCggGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.