miRNA display CGI


Results 1 - 20 of 568 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 3' -68.7 NC_006560.1 + 68530 0.66 0.372593
Target:  5'- gCGUCU--GGaCCCGCGcGCcucgagCCCCGCCCc -3'
miRNA:   3'- -GCAGGugCCcGGGCGC-CG------GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 142629 0.66 0.36451
Target:  5'- ---gCGCGGGCCCaGaugGGCCCCCGaggcuuuUCCg -3'
miRNA:   3'- gcagGUGCCCGGG-Cg--CCGGGGGC-------GGG- -5'
31089 3' -68.7 NC_006560.1 + 90126 0.66 0.380046
Target:  5'- gGUCgGCGGGgacgccguCCgGCGGaUCCCGCUCu -3'
miRNA:   3'- gCAGgUGCCC--------GGgCGCCgGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 10796 0.66 0.36524
Target:  5'- --cCCGCgGGGCCCG-GGCgagagccauCCCCGCUUc -3'
miRNA:   3'- gcaGGUG-CCCGGGCgCCG---------GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 72370 0.66 0.372593
Target:  5'- -cUCgCGgGGGCgCCGCuGGCgcugCCCGCCCc -3'
miRNA:   3'- gcAG-GUgCCCG-GGCG-CCGg---GGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 30090 0.66 0.372593
Target:  5'- -cUCCcCGGGgagGCGGCCCCgGCCUc -3'
miRNA:   3'- gcAGGuGCCCgggCGCCGGGGgCGGG- -5'
31089 3' -68.7 NC_006560.1 + 35195 0.66 0.372593
Target:  5'- --nCCGgGGGCgCCGgGGCCCgggCGCCg -3'
miRNA:   3'- gcaGGUgCCCG-GGCgCCGGGg--GCGGg -5'
31089 3' -68.7 NC_006560.1 + 10965 0.66 0.372593
Target:  5'- aCG-CCGCGcGuuCCGC--CCCCCGCCCa -3'
miRNA:   3'- -GCaGGUGC-CcgGGCGccGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 69760 0.66 0.372593
Target:  5'- -uUCC-CGGcGCUCGaCGGCgucccCCCCGCCg -3'
miRNA:   3'- gcAGGuGCC-CGGGC-GCCG-----GGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 3245 0.66 0.380046
Target:  5'- uGUggGCGGGCCCgggcggcgcGCGGCgCCagCCGCCg -3'
miRNA:   3'- gCAggUGCCCGGG---------CGCCG-GG--GGCGGg -5'
31089 3' -68.7 NC_006560.1 + 41329 0.66 0.379296
Target:  5'- --aCCGCaGGCacgacaguccgugCUGUGGCCCCC-CCCg -3'
miRNA:   3'- gcaGGUGcCCG-------------GGCGCCGGGGGcGGG- -5'
31089 3' -68.7 NC_006560.1 + 84899 0.66 0.372593
Target:  5'- gCG-CCGCc-GCCgGCGaCCCCCGCCUg -3'
miRNA:   3'- -GCaGGUGccCGGgCGCcGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 125896 0.66 0.372593
Target:  5'- cCG-CCACuGGaGCCgcaGCGGCCggCGCCCg -3'
miRNA:   3'- -GCaGGUG-CC-CGGg--CGCCGGggGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 51859 0.66 0.410838
Target:  5'- --cCCugGGGCgCgGCGcGUCCgCGCUCg -3'
miRNA:   3'- gcaGGugCCCG-GgCGC-CGGGgGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 24728 0.66 0.36524
Target:  5'- cCGcCgACGGGCCCgucgucGCGcGCCgccacgucuaCCUGCCCu -3'
miRNA:   3'- -GCaGgUGCCCGGG------CGC-CGG----------GGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 83734 0.66 0.372593
Target:  5'- cCGUCCcgacGCGGaGCUCG-GGCCCCUcauggcgaccguGCUCa -3'
miRNA:   3'- -GCAGG----UGCC-CGGGCgCCGGGGG------------CGGG- -5'
31089 3' -68.7 NC_006560.1 + 67207 0.66 0.375562
Target:  5'- ----gGCGGGaCCGgGGCCCCCuucgcgcgagcucguGCCCc -3'
miRNA:   3'- gcaggUGCCCgGGCgCCGGGGG---------------CGGG- -5'
31089 3' -68.7 NC_006560.1 + 5701 0.66 0.377799
Target:  5'- cCGUCgaggaucgcauuagCAUGcGGCCgGCGGCg-CCGCCCg -3'
miRNA:   3'- -GCAG--------------GUGC-CCGGgCGCCGggGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 34738 0.66 0.370376
Target:  5'- uCG-CCGCGgcGGCCCGCGcgucGCCUcgcgagcucgagggUCGCCCg -3'
miRNA:   3'- -GCaGGUGC--CCGGGCGC----CGGG--------------GGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 73588 0.66 0.372593
Target:  5'- gGUUCGCccggggcgagGaGGCCCG-GGCCgCCGCCg -3'
miRNA:   3'- gCAGGUG----------C-CCGGGCgCCGGgGGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.