miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 3' -68.7 NC_006560.1 + 73 0.77 0.06582
Target:  5'- gGUCCggGCGGGCCCucccCGcGCCCCgCGCCCc -3'
miRNA:   3'- gCAGG--UGCCCGGGc---GC-CGGGG-GCGGG- -5'
31089 3' -68.7 NC_006560.1 + 123 0.66 0.410838
Target:  5'- cCGg-CGCGGGUuuG-GGCggggccggCCCCGCCCc -3'
miRNA:   3'- -GCagGUGCCCGggCgCCG--------GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 159 0.76 0.088125
Target:  5'- gGUCC-CGGccccgcCCCGCGGUCCCgGCCCc -3'
miRNA:   3'- gCAGGuGCCc-----GGGCGCCGGGGgCGGG- -5'
31089 3' -68.7 NC_006560.1 + 215 0.66 0.380046
Target:  5'- cCG-CCGCGggagggcccGGCCCGCGGCUCggugcggGCCCc -3'
miRNA:   3'- -GCaGGUGC---------CCGGGCGCCGGGgg-----CGGG- -5'
31089 3' -68.7 NC_006560.1 + 275 0.69 0.267225
Target:  5'- cCGggUCGCGaGGCCCGCuucGGUCCCCagGCCg -3'
miRNA:   3'- -GCa-GGUGC-CCGGGCG---CCGGGGG--CGGg -5'
31089 3' -68.7 NC_006560.1 + 317 0.67 0.350837
Target:  5'- aGcCC-CGugaaGGCCC-CGGCCCCCucucGCCCc -3'
miRNA:   3'- gCaGGuGC----CCGGGcGCCGGGGG----CGGG- -5'
31089 3' -68.7 NC_006560.1 + 392 0.69 0.261509
Target:  5'- cCGcCCGUGcGCCCGCcccCCCCCGCCCc -3'
miRNA:   3'- -GCaGGUGCcCGGGCGcc-GGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 512 0.71 0.174866
Target:  5'- cCG-CCACGGGCgCCggggggcgGCGGCCggCCgCGCCCc -3'
miRNA:   3'- -GCaGGUGCCCG-GG--------CGCCGG--GG-GCGGG- -5'
31089 3' -68.7 NC_006560.1 + 681 0.73 0.132257
Target:  5'- gCGg-CGCGGGCUcguCGCGGgCCCCGUCCc -3'
miRNA:   3'- -GCagGUGCCCGG---GCGCCgGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 722 0.68 0.284982
Target:  5'- cCGUCCccccCGcGGCCCcguccccccccGCGG-CCCCGUCCc -3'
miRNA:   3'- -GCAGGu---GC-CCGGG-----------CGCCgGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 838 0.81 0.036137
Target:  5'- aCGcCCACGaGGcCCCGCgcgcgcccgcccacGGCCCCCGCCCc -3'
miRNA:   3'- -GCaGGUGC-CC-GGGCG--------------CCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 979 0.68 0.310087
Target:  5'- aCGcCCGgGGGCgCGC--CCCUCGCCCc -3'
miRNA:   3'- -GCaGGUgCCCGgGCGccGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 1214 0.68 0.291104
Target:  5'- -cUCCcCGGGggCGgGGCCCCUGCCg -3'
miRNA:   3'- gcAGGuGCCCggGCgCCGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 1250 0.7 0.217845
Target:  5'- aGcCCcgGCGGGgcccccgcgaagccCCCGCGaaGCCCCCGCCg -3'
miRNA:   3'- gCaGG--UGCCC--------------GGGCGC--CGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 1352 0.73 0.141915
Target:  5'- cCGUgCgCGCGGGuccCCCGCGGCCCgcacggCGCCCc -3'
miRNA:   3'- -GCA-G-GUGCCC---GGGCGCCGGGg-----GCGGG- -5'
31089 3' -68.7 NC_006560.1 + 1394 0.79 0.054087
Target:  5'- --cCCGCGGcccucgcccCCCGCGGCCCUCGCCCc -3'
miRNA:   3'- gcaGGUGCCc--------GGGCGCCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 1425 0.66 0.395248
Target:  5'- ---------cCCCGCGGCCCUCGCCCc -3'
miRNA:   3'- gcaggugcccGGGCGCCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 1470 0.68 0.291104
Target:  5'- cCGUgCGCGcgccccaucggaGGCgCGCGGCCCaCGCCg -3'
miRNA:   3'- -GCAgGUGC------------CCGgGCGCCGGGgGCGGg -5'
31089 3' -68.7 NC_006560.1 + 1915 0.7 0.214462
Target:  5'- aGUCCuCGGcGgCCGcCGGCUCgCCGUCCg -3'
miRNA:   3'- gCAGGuGCC-CgGGC-GCCGGG-GGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 2040 0.72 0.155795
Target:  5'- uGUCgGCGcGGCCgGCGGCCCagcgcaCGCgCg -3'
miRNA:   3'- gCAGgUGC-CCGGgCGCCGGGg-----GCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.