miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 3' -68.7 NC_006560.1 + 51859 0.66 0.410838
Target:  5'- --cCCugGGGCgCgGCGcGUCCgCGCUCg -3'
miRNA:   3'- gcaGGugCCCG-GgCGC-CGGGgGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 134421 0.69 0.250374
Target:  5'- --cCCugGGGCgCgGCggggcgcgGGCCCgCGCCCg -3'
miRNA:   3'- gcaGGugCCCG-GgCG--------CCGGGgGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 6505 0.69 0.250374
Target:  5'- gCGcCCGCcucccuGCCgGCGGcCCCCCGCCg -3'
miRNA:   3'- -GCaGGUGcc----CGGgCGCC-GGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 55489 0.69 0.250374
Target:  5'- gCGUCCACGGcgaggugcuGCCgGCGaCCUUCGCCg -3'
miRNA:   3'- -GCAGGUGCC---------CGGgCGCcGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 92766 0.69 0.250374
Target:  5'- cCGUgCGC--GCCCGCGGCgcgccuuauagcCCCCGCUCg -3'
miRNA:   3'- -GCAgGUGccCGGGCGCCG------------GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 94266 0.69 0.250374
Target:  5'- gGUCgAgGaggcGGCCCucgGCGcGCCCUCGCCCg -3'
miRNA:   3'- gCAGgUgC----CCGGG---CGC-CGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 95263 0.69 0.250374
Target:  5'- aGcCCGgGGcGCCCGgGGCagggCCCGCCg -3'
miRNA:   3'- gCaGGUgCC-CGGGCgCCGg---GGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 122624 0.69 0.250374
Target:  5'- gGUCC-CgGGGUCCGUGGguggUCCCGCCUg -3'
miRNA:   3'- gCAGGuG-CCCGGGCGCCg---GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 20756 0.69 0.249828
Target:  5'- uCGUCCucgagGCGGcgcugucggagcuGCCCGCGGaggCCUgGCCCa -3'
miRNA:   3'- -GCAGG-----UGCC-------------CGGGCGCCg--GGGgCGGG- -5'
31089 3' -68.7 NC_006560.1 + 31805 0.69 0.250374
Target:  5'- -aUCCGCGcGGCCCuccagGgGGCCCCCcgcaucaCCCa -3'
miRNA:   3'- gcAGGUGC-CCGGG-----CgCCGGGGGc------GGG- -5'
31089 3' -68.7 NC_006560.1 + 150276 0.69 0.250374
Target:  5'- -cUCCGCGGcCuCCGCGGCCUCC-CCg -3'
miRNA:   3'- gcAGGUGCCcG-GGCGCCGGGGGcGGg -5'
31089 3' -68.7 NC_006560.1 + 42396 0.69 0.254226
Target:  5'- gCGcCCGCgccgcacccagaaaGGGCCgCGgGGCaCCCuCGCCCc -3'
miRNA:   3'- -GCaGGUG--------------CCCGG-GCgCCG-GGG-GCGGG- -5'
31089 3' -68.7 NC_006560.1 + 119301 0.69 0.255892
Target:  5'- cCGaCCGCGccCCCGCGGCgUCCgGCCCc -3'
miRNA:   3'- -GCaGGUGCccGGGCGCCG-GGGgCGGG- -5'
31089 3' -68.7 NC_006560.1 + 18759 0.69 0.255892
Target:  5'- gGUCCugGaGGCCuucgCGCGGCgCCUCGaCgCCg -3'
miRNA:   3'- gCAGGugC-CCGG----GCGCCG-GGGGC-G-GG- -5'
31089 3' -68.7 NC_006560.1 + 61495 0.69 0.255892
Target:  5'- --aCCGgGGacGCCgCGCaGGCgCCCCGCCCc -3'
miRNA:   3'- gcaGGUgCC--CGG-GCG-CCG-GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 75109 0.69 0.255892
Target:  5'- --aCCGCGacccuGGCCCuggagGCGGCCUUCGCCUu -3'
miRNA:   3'- gcaGGUGC-----CCGGG-----CGCCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 77806 0.69 0.255892
Target:  5'- aCGcgCUGCGGGagCGcCGGCCCCCggaGCCCc -3'
miRNA:   3'- -GCa-GGUGCCCggGC-GCCGGGGG---CGGG- -5'
31089 3' -68.7 NC_006560.1 + 102733 0.69 0.255892
Target:  5'- cCGUCCcuccCGu-CUCGCcGCCCCCGCCCg -3'
miRNA:   3'- -GCAGGu---GCccGGGCGcCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 122228 0.69 0.255892
Target:  5'- gGUCCGCcccGGG-CCGCGcCCCCuCGCCg -3'
miRNA:   3'- gCAGGUG---CCCgGGCGCcGGGG-GCGGg -5'
31089 3' -68.7 NC_006560.1 + 3961 0.69 0.255892
Target:  5'- aGUCU--GGGCCCGggucugGGCCCgCGCCUg -3'
miRNA:   3'- gCAGGugCCCGGGCg-----CCGGGgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.