miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 3' -68.7 NC_006560.1 + 50008 1.11 0.000212
Target:  5'- aCGUCCACGGGCCCGCGGCCCCCGCCCg -3'
miRNA:   3'- -GCAGGUGCCCGGGCGCCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 134471 0.88 0.009895
Target:  5'- --cCCGCGGGCCCGCGGUCCCCGUCg -3'
miRNA:   3'- gcaGGUGCCCGGGCGCCGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 144388 0.86 0.015176
Target:  5'- gCGUCCGCGGGCCgGCgGGCCCCCcggGCCUc -3'
miRNA:   3'- -GCAGGUGCCCGGgCG-CCGGGGG---CGGG- -5'
31089 3' -68.7 NC_006560.1 + 52945 0.84 0.019949
Target:  5'- --cCCACGGGCCgccggugCGCGGCCCCgGCCCg -3'
miRNA:   3'- gcaGGUGCCCGG-------GCGCCGGGGgCGGG- -5'
31089 3' -68.7 NC_006560.1 + 45739 0.83 0.026335
Target:  5'- gCG-CCGCGGGCUCGC-GCCCCCGCCa -3'
miRNA:   3'- -GCaGGUGCCCGGGCGcCGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 7185 0.82 0.027683
Target:  5'- --cCCGCGGGCCCGCGGCCCCggacauaaaGCCg -3'
miRNA:   3'- gcaGGUGCCCGGGCGCCGGGGg--------CGGg -5'
31089 3' -68.7 NC_006560.1 + 73985 0.82 0.027683
Target:  5'- gCGg-CGCGGGCCCG-GGUCCCCGCCCc -3'
miRNA:   3'- -GCagGUGCCCGGGCgCCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 43958 0.82 0.0291
Target:  5'- gCGcCCGCGGGCCCG-GGCguggugcccgaCCCCGCCCg -3'
miRNA:   3'- -GCaGGUGCCCGGGCgCCG-----------GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 53532 0.82 0.029834
Target:  5'- cCGUCCcgucCGGGCCCGCcccGGCUCCaCGCCCg -3'
miRNA:   3'- -GCAGGu---GCCCGGGCG---CCGGGG-GCGGG- -5'
31089 3' -68.7 NC_006560.1 + 134209 0.81 0.033791
Target:  5'- ---gCGCGGGCCCGCGGggucggCCCCGCCCg -3'
miRNA:   3'- gcagGUGCCCGGGCGCCg-----GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 35157 0.81 0.034385
Target:  5'- gCGUCCGacgcgcccggccgcCGGGCCCGgGG-CCCCGCCCc -3'
miRNA:   3'- -GCAGGU--------------GCCCGGGCgCCgGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 22203 0.81 0.034642
Target:  5'- cCGUcgCCGCGGcccgccCCCGCGGCCCCgGCCCg -3'
miRNA:   3'- -GCA--GGUGCCc-----GGGCGCCGGGGgCGGG- -5'
31089 3' -68.7 NC_006560.1 + 838 0.81 0.036137
Target:  5'- aCGcCCACGaGGcCCCGCgcgcgcccgcccacGGCCCCCGCCCc -3'
miRNA:   3'- -GCaGGUGC-CC-GGGCG--------------CCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 23947 0.81 0.038262
Target:  5'- --cCCGCGGcGCCCGCGcccGCCgCCCGCCCg -3'
miRNA:   3'- gcaGGUGCC-CGGGCGC---CGG-GGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 130938 0.81 0.038262
Target:  5'- gGUCCACGcGGcCCCGgGGgCCCUGCCCc -3'
miRNA:   3'- gCAGGUGC-CC-GGGCgCCgGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 133455 0.79 0.046647
Target:  5'- gCGUCCuCGGGCCCGCgGGCUCCggggCGUCCg -3'
miRNA:   3'- -GCAGGuGCCCGGGCG-CCGGGG----GCGGG- -5'
31089 3' -68.7 NC_006560.1 + 30797 0.79 0.050233
Target:  5'- aGUCaagccCGGGCCCagGCGGCCCUgGCCCa -3'
miRNA:   3'- gCAGgu---GCCCGGG--CGCCGGGGgCGGG- -5'
31089 3' -68.7 NC_006560.1 + 94034 0.79 0.054087
Target:  5'- aGUCCAUGGGCCuCGCGcGgCCgUGCCCg -3'
miRNA:   3'- gCAGGUGCCCGG-GCGC-CgGGgGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 1394 0.79 0.054087
Target:  5'- --cCCGCGGcccucgcccCCCGCGGCCCUCGCCCc -3'
miRNA:   3'- gcaGGUGCCc--------GGGCGCCGGGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 25497 0.78 0.055435
Target:  5'- cCGcCCGCGacccccGCCCGCGaCCCCCGCCCg -3'
miRNA:   3'- -GCaGGUGCc-----CGGGCGCcGGGGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.