miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 5' -55.6 NC_006560.1 + 26647 0.66 0.939985
Target:  5'- nGGGGGGGAcggggccgcggGGGGGACGGgGcCGcGGg -3'
miRNA:   3'- -CCUCUCCU-----------CCUCCUGCUgCaGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 34425 0.66 0.935204
Target:  5'- nGGGAGGAGGgaagagagagaGGcGGCGGCGgcgGUGGUc -3'
miRNA:   3'- cCUCUCCUCC-----------UC-CUGCUGCag-UACCA- -5'
31089 5' -55.6 NC_006560.1 + 16369 0.66 0.935204
Target:  5'- cGGAgcGAGGGGGGgcauggcggcgcGGGCGgGCGUCGccUGGa -3'
miRNA:   3'- -CCU--CUCCUCCU------------CCUGC-UGCAGU--ACCa -5'
31089 5' -55.6 NC_006560.1 + 12715 0.66 0.930187
Target:  5'- gGGGGuGGGGGcGGGGCccuggaugguGACGUCGUcGGc -3'
miRNA:   3'- -CCUCuCCUCC-UCCUG----------CUGCAGUA-CCa -5'
31089 5' -55.6 NC_006560.1 + 96162 0.66 0.930187
Target:  5'- aGGAcGAGGAGGucccGGACGAgGaCggGGa -3'
miRNA:   3'- -CCU-CUCCUCCu---CCUGCUgCaGuaCCa -5'
31089 5' -55.6 NC_006560.1 + 66063 0.66 0.924935
Target:  5'- cGGGGGcGGGGGGGccauguccuCGACGcCGUGGa -3'
miRNA:   3'- cCUCUC-CUCCUCCu--------GCUGCaGUACCa -5'
31089 5' -55.6 NC_006560.1 + 44746 0.66 0.92167
Target:  5'- cGGAGAGcGAcguugucauGGAGGACGugGcCAucgccgagcgggcucUGGg -3'
miRNA:   3'- -CCUCUC-CU---------CCUCCUGCugCaGU---------------ACCa -5'
31089 5' -55.6 NC_006560.1 + 23463 0.66 0.919447
Target:  5'- cGGcGGAGGAGGGGGAcgcCGACGcCGc--- -3'
miRNA:   3'- -CC-UCUCCUCCUCCU---GCUGCaGUacca -5'
31089 5' -55.6 NC_006560.1 + 35668 0.66 0.919447
Target:  5'- cGGGAGGAGGggccgcGGGGCGGgGgagCcgGGg -3'
miRNA:   3'- cCUCUCCUCC------UCCUGCUgCa--GuaCCa -5'
31089 5' -55.6 NC_006560.1 + 66757 0.66 0.919447
Target:  5'- uGGcGGAGGGcGAGGACGACGgcccccgCGcGGUc -3'
miRNA:   3'- -CC-UCUCCUcCUCCUGCUGCa------GUaCCA- -5'
31089 5' -55.6 NC_006560.1 + 102830 0.66 0.919447
Target:  5'- cGGcGAcGcGAGGGGGGCGGCGgu-UGGg -3'
miRNA:   3'- -CCuCU-C-CUCCUCCUGCUGCaguACCa -5'
31089 5' -55.6 NC_006560.1 + 110335 0.66 0.913723
Target:  5'- aGGAGAcguuuGGGGcGGACGGCGUCuuucgccucGUGGc -3'
miRNA:   3'- -CCUCUc----CUCCuCCUGCUGCAG---------UACCa -5'
31089 5' -55.6 NC_006560.1 + 35878 0.66 0.913723
Target:  5'- aGGGAGGAGGAGGAgGAg--CA-GGa -3'
miRNA:   3'- cCUCUCCUCCUCCUgCUgcaGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 25647 0.66 0.913723
Target:  5'- aGGGGGGGAGGGGGA-GAgGg---GGa -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUgCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 34157 0.66 0.913138
Target:  5'- uGGAGGGGAGGgguccgcgagagaAGGGCGGgGgggagAUGGg -3'
miRNA:   3'- -CCUCUCCUCC-------------UCCUGCUgCag---UACCa -5'
31089 5' -55.6 NC_006560.1 + 149363 0.66 0.912551
Target:  5'- cGGGGAGGAGccGGGCGGCGcCGccccccgagcggGGUa -3'
miRNA:   3'- -CCUCUCCUCcuCCUGCUGCaGUa-----------CCA- -5'
31089 5' -55.6 NC_006560.1 + 71346 0.67 0.907766
Target:  5'- gGGGGAGGGGGcggcGGGCGGCGgaaacaccaCAcGGg -3'
miRNA:   3'- -CCUCUCCUCCu---CCUGCUGCa--------GUaCCa -5'
31089 5' -55.6 NC_006560.1 + 25714 0.67 0.907766
Target:  5'- gGGAGAGGGGGAGaGGgggaGACGcCccGGc -3'
miRNA:   3'- -CCUCUCCUCCUC-CUg---CUGCaGuaCCa -5'
31089 5' -55.6 NC_006560.1 + 141626 0.67 0.907766
Target:  5'- gGGAGgaaGGGGGGGGGAaggGACGgCAgggGGg -3'
miRNA:   3'- -CCUC---UCCUCCUCCUg--CUGCaGUa--CCa -5'
31089 5' -55.6 NC_006560.1 + 124775 0.67 0.907766
Target:  5'- aGGGGGGcGAGGccGGGCGGCGcuUCGUGu- -3'
miRNA:   3'- -CCUCUC-CUCCu-CCUGCUGC--AGUACca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.