miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31090 3' -60.5 NC_006560.1 + 41676 0.66 0.768181
Target:  5'- -gCCGUCGCGGgCggCGCGUgGaaguggaagcgccgcGGGUCc -3'
miRNA:   3'- ggGGCAGCGCCgGa-GCGCAaU---------------CCCAG- -5'
31090 3' -60.5 NC_006560.1 + 11573 0.66 0.764555
Target:  5'- uCCCCGaccucCGCcGCCUCGgGggucgcGGGGUUg -3'
miRNA:   3'- -GGGGCa----GCGcCGGAGCgCaa----UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 1863 0.66 0.764555
Target:  5'- ---gGUCGCGGgCgggggUCGCGggcgGGGGUCg -3'
miRNA:   3'- ggggCAGCGCCgG-----AGCGCaa--UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 64975 0.66 0.764555
Target:  5'- cCCUCGgCGgGGCCggccgcCGCGggGGGGc- -3'
miRNA:   3'- -GGGGCaGCgCCGGa-----GCGCaaUCCCag -5'
31090 3' -60.5 NC_006560.1 + 3254 0.66 0.761823
Target:  5'- gCCCGg-GCGGCg-CGCGgcgccagccgccgcgGGGGUCg -3'
miRNA:   3'- gGGGCagCGCCGgaGCGCaa-------------UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 56408 0.66 0.759083
Target:  5'- gCCCCGcgCGgGGCCggggagggUGCGguugccccgcgccGGGGUCg -3'
miRNA:   3'- -GGGGCa-GCgCCGGa-------GCGCaa-----------UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 117818 0.66 0.755414
Target:  5'- aCCCCuacgCGaCGGCCgcccugCGCGUgagcUGGGGg- -3'
miRNA:   3'- -GGGGca--GC-GCCGGa-----GCGCA----AUCCCag -5'
31090 3' -60.5 NC_006560.1 + 95946 0.66 0.755414
Target:  5'- cCCCCaagcUCGCGGCCg-GCGggccGGaGUCg -3'
miRNA:   3'- -GGGGc---AGCGCCGGagCGCaau-CC-CAG- -5'
31090 3' -60.5 NC_006560.1 + 12205 0.66 0.755414
Target:  5'- gCCCCGaCG-GGCCcCGCGgccaggAGGGa- -3'
miRNA:   3'- -GGGGCaGCgCCGGaGCGCaa----UCCCag -5'
31090 3' -60.5 NC_006560.1 + 58252 0.66 0.746173
Target:  5'- gCCgCCGagGCgagccgccGGCCUCgGCGUcgacGGGGUCu -3'
miRNA:   3'- -GG-GGCagCG--------CCGGAG-CGCAa---UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 43763 0.66 0.746173
Target:  5'- gCCCCGUgCGCgGGCCggCGcCGUUGaccgcgacGGUCa -3'
miRNA:   3'- -GGGGCA-GCG-CCGGa-GC-GCAAUc-------CCAG- -5'
31090 3' -60.5 NC_006560.1 + 42048 0.66 0.744313
Target:  5'- aCUCCGgaggggcggagGCGGCCUcCGCGggcgGGGGcUCg -3'
miRNA:   3'- -GGGGCag---------CGCCGGA-GCGCaa--UCCC-AG- -5'
31090 3' -60.5 NC_006560.1 + 4313 0.66 0.736839
Target:  5'- cUCCaCGUCGcCGGCCgucaCGCGc--GGGUUc -3'
miRNA:   3'- -GGG-GCAGC-GCCGGa---GCGCaauCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 4352 0.66 0.736839
Target:  5'- gCCCa---UGGCCUCGCGguccGGGUCg -3'
miRNA:   3'- gGGGcagcGCCGGAGCGCaau-CCCAG- -5'
31090 3' -60.5 NC_006560.1 + 78357 0.66 0.736839
Target:  5'- gCCCGacccCGCGGCg-CGCGUgacGGUCa -3'
miRNA:   3'- gGGGCa---GCGCCGgaGCGCAaucCCAG- -5'
31090 3' -60.5 NC_006560.1 + 129884 0.66 0.736839
Target:  5'- uUCCGgcugCGCGcGCC-CGCGUgGGGG-Cg -3'
miRNA:   3'- gGGGCa---GCGC-CGGaGCGCAaUCCCaG- -5'
31090 3' -60.5 NC_006560.1 + 142536 0.66 0.736839
Target:  5'- gCCCCGggcccgGCGGCCgggCGCGUcggacgcGGGcCg -3'
miRNA:   3'- -GGGGCag----CGCCGGa--GCGCAau-----CCCaG- -5'
31090 3' -60.5 NC_006560.1 + 107471 0.66 0.735901
Target:  5'- gCCCGggggcgcUCGCcGCCUcCGCGcUGGGaGUCg -3'
miRNA:   3'- gGGGC-------AGCGcCGGA-GCGCaAUCC-CAG- -5'
31090 3' -60.5 NC_006560.1 + 69662 0.66 0.727423
Target:  5'- cCCCCGcCGC-GCC-CGCcaccccGGGGUCg -3'
miRNA:   3'- -GGGGCaGCGcCGGaGCGcaa---UCCCAG- -5'
31090 3' -60.5 NC_006560.1 + 14024 0.66 0.727423
Target:  5'- gCCCGgCGgaCGGggUCGCGUcGGGGUCa -3'
miRNA:   3'- gGGGCaGC--GCCggAGCGCAaUCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.