miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 5' -65.8 NC_006560.1 + 150308 0.73 0.183813
Target:  5'- -gCCGCCGCgggaGGGCCCGGccccccgCGCCg-- -3'
miRNA:   3'- gaGGCGGCGg---CCCGGGCCa------GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 150226 0.71 0.247925
Target:  5'- --aCGCUGCCGGGCgugCUGGUUGCCcgCg -3'
miRNA:   3'- gagGCGGCGGCCCG---GGCCAGCGGaaG- -5'
31093 5' -65.8 NC_006560.1 + 149356 0.68 0.350883
Target:  5'- -cCCGCCGCgGGGaggagCCGGgcggCGCCg-- -3'
miRNA:   3'- gaGGCGGCGgCCCg----GGCCa---GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 147200 0.67 0.404604
Target:  5'- cCUCCcCCGCCggaggcgcgggGGGCCgGGgCGCCUc- -3'
miRNA:   3'- -GAGGcGGCGG-----------CCCGGgCCaGCGGAag -5'
31093 5' -65.8 NC_006560.1 + 146905 0.65 0.50408
Target:  5'- ---gGCCGCCuGGGCCCGGgcuugacuccggGCCUg- -3'
miRNA:   3'- gaggCGGCGG-CCCGGGCCag----------CGGAag -5'
31093 5' -65.8 NC_006560.1 + 145388 0.68 0.380179
Target:  5'- cCUCUGUCcccugugucucugGCCGGGCCuCGGUCcCCcgUCg -3'
miRNA:   3'- -GAGGCGG-------------CGGCCCGG-GCCAGcGGa-AG- -5'
31093 5' -65.8 NC_006560.1 + 145052 0.66 0.489685
Target:  5'- -gCCGCCGCCGGGCggccuccucccCUGGgcgggGCCg-- -3'
miRNA:   3'- gaGGCGGCGGCCCG-----------GGCCag---CGGaag -5'
31093 5' -65.8 NC_006560.1 + 144975 0.66 0.468461
Target:  5'- -cCCGCCcccccgacggaccCCGGGCCCGcG-CGCCcUCg -3'
miRNA:   3'- gaGGCGGc------------GGCCCGGGC-CaGCGGaAG- -5'
31093 5' -65.8 NC_006560.1 + 144483 0.7 0.265132
Target:  5'- -cCCGUCGCCGGccugccccgucuGCCCcgcGGcCGCCUUCc -3'
miRNA:   3'- gaGGCGGCGGCC------------CGGG---CCaGCGGAAG- -5'
31093 5' -65.8 NC_006560.1 + 142501 0.66 0.471966
Target:  5'- gUUCGgCGcCCGGGCCCcGG-CGCCc-- -3'
miRNA:   3'- gAGGCgGC-GGCCCGGG-CCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 142408 0.66 0.49866
Target:  5'- -cCCGCCGCgcccccggacccCGGGCCCcGcCGCCc-- -3'
miRNA:   3'- gaGGCGGCG------------GCCCGGGcCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 141563 0.71 0.253556
Target:  5'- --aCGCCGgCGGGCCCGGcUCGaCCc-- -3'
miRNA:   3'- gagGCGGCgGCCCGGGCC-AGC-GGaag -5'
31093 5' -65.8 NC_006560.1 + 139057 0.72 0.19717
Target:  5'- gUCCcgGCCcguGCCGGGCCCGGgggcgCGCCc-- -3'
miRNA:   3'- gAGG--CGG---CGGCCCGGGCCa----GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 135473 0.7 0.283294
Target:  5'- ---aGCCGCCGgugcccucGGCCCGGUUucgggaugagGCCUUCu -3'
miRNA:   3'- gaggCGGCGGC--------CCGGGCCAG----------CGGAAG- -5'
31093 5' -65.8 NC_006560.1 + 134595 0.7 0.281434
Target:  5'- -gCCGCUGCaUGGGCgagucgaagaggagCCGGUCGCCg-- -3'
miRNA:   3'- gaGGCGGCG-GCCCG--------------GGCCAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 133665 0.76 0.116491
Target:  5'- --aCGCCGCUGGGCCCGGUgaugagcgCGCCc-- -3'
miRNA:   3'- gagGCGGCGGCCCGGGCCA--------GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 133514 0.66 0.463229
Target:  5'- --gCGCCgGCCGGGgUCGG-CGgCUUCg -3'
miRNA:   3'- gagGCGG-CGGCCCgGGCCaGCgGAAG- -5'
31093 5' -65.8 NC_006560.1 + 131871 0.68 0.365704
Target:  5'- --gCGCUGCgGGGCgCGGUCGCg--- -3'
miRNA:   3'- gagGCGGCGgCCCGgGCCAGCGgaag -5'
31093 5' -65.8 NC_006560.1 + 131822 0.69 0.322539
Target:  5'- -cCCGCaGCgCGGGCCCGcGUaCGCCg-- -3'
miRNA:   3'- gaGGCGgCG-GCCCGGGC-CA-GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 131615 0.66 0.463229
Target:  5'- --gCGCCGCC-GGCCCGG-CGgCggUCg -3'
miRNA:   3'- gagGCGGCGGcCCGGGCCaGCgGa-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.