miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31094 5' -68.1 NC_006560.1 + 93161 0.66 0.377992
Target:  5'- gCGCCGCGuG-UCGCGUCCCCcCCAc- -3'
miRNA:   3'- -GCGGCGCcCgAGCGCGGGGGcGGUcc -5'
31094 5' -68.1 NC_006560.1 + 107513 0.66 0.383287
Target:  5'- uCGCCGCGGcccucgcgggccugGCcCGCGUCgCCCGgaCGGGc -3'
miRNA:   3'- -GCGGCGCC--------------CGaGCGCGG-GGGCg-GUCC- -5'
31094 5' -68.1 NC_006560.1 + 27099 0.66 0.377992
Target:  5'- cCGaaGCGGGcCUCGCGaCCCgGCCu-- -3'
miRNA:   3'- -GCggCGCCC-GAGCGCgGGGgCGGucc -5'
31094 5' -68.1 NC_006560.1 + 39324 0.66 0.42819
Target:  5'- gGCgGUGGGgcggggccgcccgccCUCGCGCCUgCGCCcccGGc -3'
miRNA:   3'- gCGgCGCCC---------------GAGCGCGGGgGCGGu--CC- -5'
31094 5' -68.1 NC_006560.1 + 123914 0.66 0.377992
Target:  5'- aCGCCGuCGccccGCgcugagCGCaagcgGCCCCCGCCGGa -3'
miRNA:   3'- -GCGGC-GCc---CGa-----GCG-----CGGGGGCGGUCc -5'
31094 5' -68.1 NC_006560.1 + 114874 0.66 0.377992
Target:  5'- aCGCgCGgGGG-UCGcCGCUCCCGCauaaaAGGc -3'
miRNA:   3'- -GCG-GCgCCCgAGC-GCGGGGGCGg----UCC- -5'
31094 5' -68.1 NC_006560.1 + 90314 0.66 0.381011
Target:  5'- uCGCCGUGGcGCUcCGgGCCCgcaacguggacgccgUCGCgCGGGc -3'
miRNA:   3'- -GCGGCGCC-CGA-GCgCGGG---------------GGCG-GUCC- -5'
31094 5' -68.1 NC_006560.1 + 94450 0.66 0.377239
Target:  5'- gCGgCGCGGGCgcgCGCGCUgCgCGugcuggaCCAGGc -3'
miRNA:   3'- -GCgGCGCCCGa--GCGCGGgG-GC-------GGUCC- -5'
31094 5' -68.1 NC_006560.1 + 123971 0.66 0.385571
Target:  5'- gCGgCGcCGGGC-CGCGaaccccgcgaCCCCGCCcGGc -3'
miRNA:   3'- -GCgGC-GCCCGaGCGCg---------GGGGCGGuCC- -5'
31094 5' -68.1 NC_006560.1 + 105963 0.66 0.383287
Target:  5'- gGCCGCcGGagaugaacgagccuCUCGUgcucccggGCCCgCCGCCGGGc -3'
miRNA:   3'- gCGGCGcCC--------------GAGCG--------CGGG-GGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 84343 0.66 0.377992
Target:  5'- gGcCCGCGaGCggCGCGCCuCCCGgcucgcCCGGGa -3'
miRNA:   3'- gC-GGCGCcCGa-GCGCGG-GGGC------GGUCC- -5'
31094 5' -68.1 NC_006560.1 + 83993 0.66 0.377992
Target:  5'- uGCUGCGGGCggcCG-GCCCCgagGCCAu- -3'
miRNA:   3'- gCGGCGCCCGa--GCgCGGGGg--CGGUcc -5'
31094 5' -68.1 NC_006560.1 + 5167 0.66 0.383287
Target:  5'- gGCCGCGGGggCGgGCcgcggcgacggcggCCCCGacggCGGGg -3'
miRNA:   3'- gCGGCGCCCgaGCgCG--------------GGGGCg---GUCC- -5'
31094 5' -68.1 NC_006560.1 + 104751 0.66 0.377992
Target:  5'- uCGCC-CGGGagaUG-GCCCCCGCCccGGGc -3'
miRNA:   3'- -GCGGcGCCCga-GCgCGGGGGCGG--UCC- -5'
31094 5' -68.1 NC_006560.1 + 148680 0.66 0.377992
Target:  5'- gCGCCGUGGGCggccccgGgGCCgCCGUCcaauGGGa -3'
miRNA:   3'- -GCGGCGCCCGag-----CgCGGgGGCGG----UCC- -5'
31094 5' -68.1 NC_006560.1 + 60661 0.66 0.385571
Target:  5'- aCGCgCGgGGGCgagGgGCCCCCGCg--- -3'
miRNA:   3'- -GCG-GCgCCCGag-CgCGGGGGCGgucc -5'
31094 5' -68.1 NC_006560.1 + 112910 0.66 0.377992
Target:  5'- gGaCGCGGcGCU-GCuGCCCCCGCUgauguGGGa -3'
miRNA:   3'- gCgGCGCC-CGAgCG-CGGGGGCGG-----UCC- -5'
31094 5' -68.1 NC_006560.1 + 82595 0.66 0.375738
Target:  5'- gGCCGC-GGCUCGCcccgagGCCCCggacggcggcugggCGgCGGGg -3'
miRNA:   3'- gCGGCGcCCGAGCG------CGGGG--------------GCgGUCC- -5'
31094 5' -68.1 NC_006560.1 + 126585 0.66 0.377992
Target:  5'- aCGcCCGUcuGGGCgcccggccacUGCGCCUCCGCCAc- -3'
miRNA:   3'- -GC-GGCG--CCCGa---------GCGCGGGGGCGGUcc -5'
31094 5' -68.1 NC_006560.1 + 30035 0.66 0.385571
Target:  5'- gGCCGagGaGGCggugCGCGCCggcaCCGCCGuGGa -3'
miRNA:   3'- gCGGCg-C-CCGa---GCGCGGg---GGCGGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.