miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31094 5' -68.1 NC_006560.1 + 45739 1.09 0.000285
Target:  5'- gCGCCGCGGGCUCGCGCCCCCGCCAGGg -3'
miRNA:   3'- -GCGGCGCCCGAGCGCGGGGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 125526 0.81 0.035518
Target:  5'- gGCCGCGGug-CGCGCCgCCGCCGGGg -3'
miRNA:   3'- gCGGCGCCcgaGCGCGGgGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 32891 0.81 0.036418
Target:  5'- gGCCGCGGGggggCGCGCCCgcgggguagCCGCCGGGg -3'
miRNA:   3'- gCGGCGCCCga--GCGCGGG---------GGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 6073 0.79 0.055616
Target:  5'- uCGCCGCGcccGCUCGCGCCCUCGCgucgAGGg -3'
miRNA:   3'- -GCGGCGCc--CGAGCGCGGGGGCGg---UCC- -5'
31094 5' -68.1 NC_006560.1 + 30567 0.79 0.05701
Target:  5'- gCGCCGCGGcGCgCGCGCCUCgCGCCGcGGc -3'
miRNA:   3'- -GCGGCGCC-CGaGCGCGGGG-GCGGU-CC- -5'
31094 5' -68.1 NC_006560.1 + 83522 0.78 0.066115
Target:  5'- gGCCGCGGGCgCGCGCCCgcggagaCGUgGGGa -3'
miRNA:   3'- gCGGCGCCCGaGCGCGGGg------GCGgUCC- -5'
31094 5' -68.1 NC_006560.1 + 57295 0.77 0.069451
Target:  5'- gCGCCGCGGGgg-GCGUCCUCGUCGGGa -3'
miRNA:   3'- -GCGGCGCCCgagCGCGGGGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 979 0.77 0.072769
Target:  5'- aCGCC-CGGGggCGCGCCCCUcgccccgGCCGGGg -3'
miRNA:   3'- -GCGGcGCCCgaGCGCGGGGG-------CGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 22629 0.77 0.072948
Target:  5'- cCGCCGCGGGCcgCcgccgagacggGCGUCgCCGCCGGGc -3'
miRNA:   3'- -GCGGCGCCCGa-G-----------CGCGGgGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 49998 0.77 0.072948
Target:  5'- aCGCCGCcggacguccacGGGCcCGCgGCCCCCGCCcgcggAGGg -3'
miRNA:   3'- -GCGGCG-----------CCCGaGCG-CGGGGGCGG-----UCC- -5'
31094 5' -68.1 NC_006560.1 + 51769 0.77 0.076614
Target:  5'- gGCCgGUGGcCUCGCGCCCCCcggcggcgggcGCCGGGa -3'
miRNA:   3'- gCGG-CGCCcGAGCGCGGGGG-----------CGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 32463 0.77 0.076614
Target:  5'- gGCCGgGGGCUgCGgGCUCCC-CCGGGg -3'
miRNA:   3'- gCGGCgCCCGA-GCgCGGGGGcGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 28491 0.77 0.078512
Target:  5'- cCGCCcCGGGC-CGCGCCCCCucgccGCCAuGGc -3'
miRNA:   3'- -GCGGcGCCCGaGCGCGGGGG-----CGGU-CC- -5'
31094 5' -68.1 NC_006560.1 + 35002 0.76 0.080456
Target:  5'- gGCCGCGGGCcggccggGCGCCCCCuCCGGu -3'
miRNA:   3'- gCGGCGCCCGag-----CGCGGGGGcGGUCc -5'
31094 5' -68.1 NC_006560.1 + 29780 0.76 0.080456
Target:  5'- gGCCGCGGGCccccucUCcccCGCCCCCGCCccgcgAGGu -3'
miRNA:   3'- gCGGCGCCCG------AGc--GCGGGGGCGG-----UCC- -5'
31094 5' -68.1 NC_006560.1 + 23615 0.76 0.080456
Target:  5'- cCGCCGCGcGGCgccgcCGCGCCCgCGCCGc- -3'
miRNA:   3'- -GCGGCGC-CCGa----GCGCGGGgGCGGUcc -5'
31094 5' -68.1 NC_006560.1 + 15137 0.76 0.080456
Target:  5'- gGUCGCGGGCUCuGgGcCCCCCGCCcccGGc -3'
miRNA:   3'- gCGGCGCCCGAG-CgC-GGGGGCGGu--CC- -5'
31094 5' -68.1 NC_006560.1 + 11508 0.76 0.082445
Target:  5'- gCGCCGgGGaggcGCUCGUcgcccGaCCCCCGCCGGGg -3'
miRNA:   3'- -GCGGCgCC----CGAGCG-----C-GGGGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 122903 0.76 0.082445
Target:  5'- uGCuCGUGGGCgacUGCGCCCUccgCGCCGGGg -3'
miRNA:   3'- gCG-GCGCCCGa--GCGCGGGG---GCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 23325 0.76 0.084481
Target:  5'- cCGCCGCGGccggcGC-CGCGCCgCCGCCccGGGa -3'
miRNA:   3'- -GCGGCGCC-----CGaGCGCGGgGGCGG--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.