Results 1 - 20 of 514 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31094 | 5' | -68.1 | NC_006560.1 | + | 39324 | 0.66 | 0.42819 |
Target: 5'- gGCgGUGGGgcggggccgcccgccCUCGCGCCUgCGCCcccGGc -3' miRNA: 3'- gCGgCGCCC---------------GAGCGCGGGgGCGGu--CC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 28491 | 0.77 | 0.078512 |
Target: 5'- cCGCCcCGGGC-CGCGCCCCCucgccGCCAuGGc -3' miRNA: 3'- -GCGGcGCCCGaGCGCGGGGG-----CGGU-CC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 15137 | 0.76 | 0.080456 |
Target: 5'- gGUCGCGGGCUCuGgGcCCCCCGCCcccGGc -3' miRNA: 3'- gCGGCGCCCGAG-CgC-GGGGGCGGu--CC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 23615 | 0.76 | 0.080456 |
Target: 5'- cCGCCGCGcGGCgccgcCGCGCCCgCGCCGc- -3' miRNA: 3'- -GCGGCGC-CCGa----GCGCGGGgGCGGUcc -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 29780 | 0.76 | 0.080456 |
Target: 5'- gGCCGCGGGCccccucUCcccCGCCCCCGCCccgcgAGGu -3' miRNA: 3'- gCGGCGCCCG------AGc--GCGGGGGCGG-----UCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 35002 | 0.76 | 0.080456 |
Target: 5'- gGCCGCGGGCcggccggGCGCCCCCuCCGGu -3' miRNA: 3'- gCGGCGCCCGag-----CGCGGGGGcGGUCc -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 11508 | 0.76 | 0.082445 |
Target: 5'- gCGCCGgGGaggcGCUCGUcgcccGaCCCCCGCCGGGg -3' miRNA: 3'- -GCGGCgCC----CGAGCG-----C-GGGGGCGGUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 122903 | 0.76 | 0.082445 |
Target: 5'- uGCuCGUGGGCgacUGCGCCCUccgCGCCGGGg -3' miRNA: 3'- gCG-GCGCCCGa--GCGCGGGG---GCGGUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 88678 | 0.76 | 0.084481 |
Target: 5'- gCGgCGCGGGCUgCGCGCCgCgGCCGGcGg -3' miRNA: 3'- -GCgGCGCCCGA-GCGCGGgGgCGGUC-C- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 51769 | 0.77 | 0.076614 |
Target: 5'- gGCCgGUGGcCUCGCGCCCCCcggcggcgggcGCCGGGa -3' miRNA: 3'- gCGG-CGCCcGAGCGCGGGGG-----------CGGUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 32463 | 0.77 | 0.076614 |
Target: 5'- gGCCGgGGGCUgCGgGCUCCC-CCGGGg -3' miRNA: 3'- gCGGCgCCCGA-GCgCGGGGGcGGUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 49998 | 0.77 | 0.072948 |
Target: 5'- aCGCCGCcggacguccacGGGCcCGCgGCCCCCGCCcgcggAGGg -3' miRNA: 3'- -GCGGCG-----------CCCGaGCG-CGGGGGCGG-----UCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 125526 | 0.81 | 0.035518 |
Target: 5'- gGCCGCGGug-CGCGCCgCCGCCGGGg -3' miRNA: 3'- gCGGCGCCcgaGCGCGGgGGCGGUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 32891 | 0.81 | 0.036418 |
Target: 5'- gGCCGCGGGggggCGCGCCCgcgggguagCCGCCGGGg -3' miRNA: 3'- gCGGCGCCCga--GCGCGGG---------GGCGGUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 6073 | 0.79 | 0.055616 |
Target: 5'- uCGCCGCGcccGCUCGCGCCCUCGCgucgAGGg -3' miRNA: 3'- -GCGGCGCc--CGAGCGCGGGGGCGg---UCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 30567 | 0.79 | 0.05701 |
Target: 5'- gCGCCGCGGcGCgCGCGCCUCgCGCCGcGGc -3' miRNA: 3'- -GCGGCGCC-CGaGCGCGGGG-GCGGU-CC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 83522 | 0.78 | 0.066115 |
Target: 5'- gGCCGCGGGCgCGCGCCCgcggagaCGUgGGGa -3' miRNA: 3'- gCGGCGCCCGaGCGCGGGg------GCGgUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 57295 | 0.77 | 0.069451 |
Target: 5'- gCGCCGCGGGgg-GCGUCCUCGUCGGGa -3' miRNA: 3'- -GCGGCGCCCgagCGCGGGGGCGGUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 979 | 0.77 | 0.072769 |
Target: 5'- aCGCC-CGGGggCGCGCCCCUcgccccgGCCGGGg -3' miRNA: 3'- -GCGGcGCCCgaGCGCGGGGG-------CGGUCC- -5' |
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31094 | 5' | -68.1 | NC_006560.1 | + | 22629 | 0.77 | 0.072948 |
Target: 5'- cCGCCGCGGGCcgCcgccgagacggGCGUCgCCGCCGGGc -3' miRNA: 3'- -GCGGCGCCCGa-G-----------CGCGGgGGCGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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