miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31094 5' -68.1 NC_006560.1 + 73 0.66 0.385571
Target:  5'- gGUCcggGCGGGCccucccCGCGCCCCgCGCCc-- -3'
miRNA:   3'- gCGG---CGCCCGa-----GCGCGGGG-GCGGucc -5'
31094 5' -68.1 NC_006560.1 + 123 0.67 0.348691
Target:  5'- cCGgCGCGGGUUUGgGCggggccggCCCCGCCccgcGGu -3'
miRNA:   3'- -GCgGCGCCCGAGCgCG--------GGGGCGGu---CC- -5'
31094 5' -68.1 NC_006560.1 + 494 0.66 0.39325
Target:  5'- -cCCGuCGGuCUCGCuCUCCCGCCAcGGg -3'
miRNA:   3'- gcGGC-GCCcGAGCGcGGGGGCGGU-CC- -5'
31094 5' -68.1 NC_006560.1 + 540 0.69 0.259234
Target:  5'- gGCCGCGccccggguccccGGCguccccCGCGCgCCCCGUCGGu -3'
miRNA:   3'- gCGGCGC------------CCGa-----GCGCG-GGGGCGGUCc -5'
31094 5' -68.1 NC_006560.1 + 605 0.68 0.318375
Target:  5'- gCGCCGCGGGCacgcggguucgaaUCGCaagGCUCUCGgcuuccgcacggccCCAGGu -3'
miRNA:   3'- -GCGGCGCCCG-------------AGCG---CGGGGGC--------------GGUCC- -5'
31094 5' -68.1 NC_006560.1 + 681 0.71 0.1938
Target:  5'- gCGgCGCGGGCUCGuCGCgggCCCCGUCc-- -3'
miRNA:   3'- -GCgGCGCCCGAGC-GCG---GGGGCGGucc -5'
31094 5' -68.1 NC_006560.1 + 875 0.72 0.161113
Target:  5'- cCGCCcccucGCGcGCcCGC-CCCCCGCCGGGg -3'
miRNA:   3'- -GCGG-----CGCcCGaGCGcGGGGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 979 0.77 0.072769
Target:  5'- aCGCC-CGGGggCGCGCCCCUcgccccgGCCGGGg -3'
miRNA:   3'- -GCGGcGCCCgaGCGCGGGGG-------CGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 1073 0.72 0.172745
Target:  5'- cCGCCGacgGGGCagaaGCCgCCCGCCAGGc -3'
miRNA:   3'- -GCGGCg--CCCGagcgCGG-GGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 1217 0.66 0.401028
Target:  5'- -cCCGgGGGCg-GgGCCCCUGCCGc- -3'
miRNA:   3'- gcGGCgCCCGagCgCGGGGGCGGUcc -5'
31094 5' -68.1 NC_006560.1 + 1527 0.69 0.264951
Target:  5'- gGCCcCGGGCgCGCGCCCggccaCGCCGu- -3'
miRNA:   3'- gCGGcGCCCGaGCGCGGGg----GCGGUcc -5'
31094 5' -68.1 NC_006560.1 + 1619 0.72 0.176786
Target:  5'- gCGCUcuGCGGGCuUCGCGCCUgUcuguggcgggGCCGGGg -3'
miRNA:   3'- -GCGG--CGCCCG-AGCGCGGGgG----------CGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 1935 0.75 0.109476
Target:  5'- uCGCCGUccgggucccaguccGGGgUCGCGCCCCCcaggGCgGGGg -3'
miRNA:   3'- -GCGGCG--------------CCCgAGCGCGGGGG----CGgUCC- -5'
31094 5' -68.1 NC_006560.1 + 2197 0.68 0.295076
Target:  5'- gGCgCGCGcGGCcgCGCGgUCCagCGCCAGGu -3'
miRNA:   3'- gCG-GCGC-CCGa-GCGCgGGG--GCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 3277 0.72 0.164909
Target:  5'- cCGCCGCgGGGgUCGgGCCC--GCCGGGc -3'
miRNA:   3'- -GCGGCG-CCCgAGCgCGGGggCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 3426 0.75 0.09774
Target:  5'- gGCgGCGGGCgCGgGCgCCCGCgGGGg -3'
miRNA:   3'- gCGgCGCCCGaGCgCGgGGGCGgUCC- -5'
31094 5' -68.1 NC_006560.1 + 3580 0.67 0.362405
Target:  5'- uGCCGCGGGCUgCGgGCCagCagcggcgcggcggCGCCGGc -3'
miRNA:   3'- gCGGCGCCCGA-GCgCGGg-G-------------GCGGUCc -5'
31094 5' -68.1 NC_006560.1 + 3661 0.67 0.341624
Target:  5'- gCGCCGcCGGGgaCGCggagGUCgCCGCgCAGGc -3'
miRNA:   3'- -GCGGC-GCCCgaGCG----CGGgGGCG-GUCC- -5'
31094 5' -68.1 NC_006560.1 + 3769 0.7 0.216093
Target:  5'- gCGCCGCGcGGCgggaccgcggcgCGCGCggCCGCCAGc -3'
miRNA:   3'- -GCGGCGC-CCGa-----------GCGCGggGGCGGUCc -5'
31094 5' -68.1 NC_006560.1 + 3929 0.69 0.248102
Target:  5'- cCGCCGCGGGggCgGCGCCgCgGUCGGcGg -3'
miRNA:   3'- -GCGGCGCCCgaG-CGCGGgGgCGGUC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.