miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 3' -56.9 NC_006560.1 + 22003 0.66 0.922608
Target:  5'- uCGGCGGCgcgGGCucgccggacccgGACGACGGCccgccGAgGACGc -3'
miRNA:   3'- -GCUGCUG---UCG------------CUGCUGCCG-----CUgCUGC- -5'
31104 3' -56.9 NC_006560.1 + 132700 0.66 0.922608
Target:  5'- gGAcCGGCAGcCGAaagaccCGGCuGGgGGCGGCGg -3'
miRNA:   3'- gCU-GCUGUC-GCU------GCUG-CCgCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 57011 0.66 0.922608
Target:  5'- gGugGAUcGCGAgcaggaGGCaGGCGugGGCGc -3'
miRNA:   3'- gCugCUGuCGCUg-----CUG-CCGCugCUGC- -5'
31104 3' -56.9 NC_006560.1 + 72044 0.66 0.922608
Target:  5'- cCGA-GGC-GCgGugGGCGGgGGCGAUGg -3'
miRNA:   3'- -GCUgCUGuCG-CugCUGCCgCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 26800 0.66 0.922608
Target:  5'- cCGGgGAgAGCGAgacCGACGG-GGCGcGCGg -3'
miRNA:   3'- -GCUgCUgUCGCU---GCUGCCgCUGC-UGC- -5'
31104 3' -56.9 NC_006560.1 + 62446 0.66 0.922608
Target:  5'- gGGCGAgAGCGG-GGCcGCGGCG-CGg -3'
miRNA:   3'- gCUGCUgUCGCUgCUGcCGCUGCuGC- -5'
31104 3' -56.9 NC_006560.1 + 5639 0.66 0.922608
Target:  5'- cCGGCGACgGGCGGCGccCGGC--CGGCu -3'
miRNA:   3'- -GCUGCUG-UCGCUGCu-GCCGcuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 14638 0.66 0.922608
Target:  5'- gGGCGGCA-CGGCcgcaacaccauGACGGUGAUGAUc -3'
miRNA:   3'- gCUGCUGUcGCUG-----------CUGCCGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 47447 0.66 0.922608
Target:  5'- cCGugGGCcGCGugG-CGGCcACGcACGc -3'
miRNA:   3'- -GCugCUGuCGCugCuGCCGcUGC-UGC- -5'
31104 3' -56.9 NC_006560.1 + 79247 0.66 0.921535
Target:  5'- gGACGccccgccGCAGCccGCGAgcccgcgaacuccCGGCGACGACu -3'
miRNA:   3'- gCUGC-------UGUCGc-UGCU-------------GCCGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 26517 0.66 0.919361
Target:  5'- gGGCGGgGGcCGugGGCGGgcgcgcgcggggccuCGugGGCGu -3'
miRNA:   3'- gCUGCUgUC-GCugCUGCC---------------GCugCUGC- -5'
31104 3' -56.9 NC_006560.1 + 52575 0.66 0.917152
Target:  5'- uGGCG-CAGUacugGAagcaccugcaGGCGGUGGCGACGg -3'
miRNA:   3'- gCUGCuGUCG----CUg---------CUGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 120616 0.66 0.917152
Target:  5'- cCGACGAUcGCccGCG-CGGUGGCGAgGg -3'
miRNA:   3'- -GCUGCUGuCGc-UGCuGCCGCUGCUgC- -5'
31104 3' -56.9 NC_006560.1 + 2538 0.66 0.917152
Target:  5'- aGACG-CGGCcggaGGCGAgcaCGGCG-CGGCGc -3'
miRNA:   3'- gCUGCuGUCG----CUGCU---GCCGCuGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 8784 0.66 0.917152
Target:  5'- gCGGgGugAGCGgaACGACGGaGGgGGCGu -3'
miRNA:   3'- -GCUgCugUCGC--UGCUGCCgCUgCUGC- -5'
31104 3' -56.9 NC_006560.1 + 146984 0.66 0.917152
Target:  5'- gGugGGCGGgGcAUGGCGGCucGCGGCc -3'
miRNA:   3'- gCugCUGUCgC-UGCUGCCGc-UGCUGc -5'
31104 3' -56.9 NC_006560.1 + 17687 0.66 0.917152
Target:  5'- cCGugGGgccCGGgGGgguCGugGGCGGCGGCc -3'
miRNA:   3'- -GCugCU---GUCgCU---GCugCCGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 11141 0.66 0.917152
Target:  5'- uCGAgGGCcccggGGCGGCG-CGGCGAgcGCGa -3'
miRNA:   3'- -GCUgCUG-----UCGCUGCuGCCGCUgcUGC- -5'
31104 3' -56.9 NC_006560.1 + 13442 0.66 0.916594
Target:  5'- gGACG-CuGCGGCaggcgcgcuccagGACGGCGuaguacacgGCGACGg -3'
miRNA:   3'- gCUGCuGuCGCUG-------------CUGCCGC---------UGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 65962 0.66 0.911472
Target:  5'- aGGCG--GGCGGCG-CGGUG-CGGCGc -3'
miRNA:   3'- gCUGCugUCGCUGCuGCCGCuGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.