miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 5' -63.9 NC_006560.1 + 543 0.66 0.537056
Target:  5'- cGCGCcccgGGuccccGGCGucccCCGCGCGCCccGUCGGu -3'
miRNA:   3'- -CGCGa---CC-----CCGC----GGCGCGCGG--UAGCUu -5'
31115 5' -63.9 NC_006560.1 + 1005 0.66 0.508831
Target:  5'- -gGCcGGGGCGCCGUcuccgcccCGCCGUCu-- -3'
miRNA:   3'- cgCGaCCCCGCGGCGc-------GCGGUAGcuu -5'
31115 5' -63.9 NC_006560.1 + 2330 0.7 0.333841
Target:  5'- cGCGCgGGcgagucGGCGgCGCG-GCCGUCGAGc -3'
miRNA:   3'- -CGCGaCC------CCGCgGCGCgCGGUAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 3125 0.7 0.312718
Target:  5'- cGCGC-GGGucgaacaugaGCGCgGCGCGCCAgggcUCGGGg -3'
miRNA:   3'- -CGCGaCCC----------CGCGgCGCGCGGU----AGCUU- -5'
31115 5' -63.9 NC_006560.1 + 3316 0.67 0.454415
Target:  5'- aGCGCcgcgggccgGGGGCGCgggCGgGCGgCGUCGGc -3'
miRNA:   3'- -CGCGa--------CCCCGCG---GCgCGCgGUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 3477 0.67 0.445651
Target:  5'- cGCGCgGGcGGCGUCgGCGuCGgCGUCGGc -3'
miRNA:   3'- -CGCGaCC-CCGCGG-CGC-GCgGUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 3760 0.71 0.2614
Target:  5'- gGCGC-GGcGGCGCCGCGCGgCGggaccgCGGc -3'
miRNA:   3'- -CGCGaCC-CCGCGGCGCGCgGUa-----GCUu -5'
31115 5' -63.9 NC_006560.1 + 3891 0.66 0.546587
Target:  5'- gGCGUcGGcGGCGUCG-GCGgCGUCGGc -3'
miRNA:   3'- -CGCGaCC-CCGCGGCgCGCgGUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 3932 0.69 0.355991
Target:  5'- cCGCgGGGGCGgCGC-CGCgGUCGGc -3'
miRNA:   3'- cGCGaCCCCGCgGCGcGCGgUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 4111 0.66 0.518173
Target:  5'- -gGCUGGcGGCGaggaagcccuuCUGCGCGCgGUCGu- -3'
miRNA:   3'- cgCGACC-CCGC-----------GGCGCGCGgUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 4264 0.67 0.445651
Target:  5'- aGCuGCUGuuGCGCCGgGCGCCcgaggccUCGAAg -3'
miRNA:   3'- -CG-CGACccCGCGGCgCGCGGu------AGCUU- -5'
31115 5' -63.9 NC_006560.1 + 4422 0.68 0.419099
Target:  5'- -aGCUcGGGCGCCcacacgggcgcggGCGCGCCggCGGc -3'
miRNA:   3'- cgCGAcCCCGCGG-------------CGCGCGGuaGCUu -5'
31115 5' -63.9 NC_006560.1 + 4634 0.66 0.527583
Target:  5'- gGCGUccaGGGGCacgggccgcgGCCGCGCGgCCGU-GAAg -3'
miRNA:   3'- -CGCGa--CCCCG----------CGGCGCGC-GGUAgCUU- -5'
31115 5' -63.9 NC_006560.1 + 4709 0.67 0.445651
Target:  5'- cGCGC-GGcGGCGCuCGCuGCGCCcggCGGc -3'
miRNA:   3'- -CGCGaCC-CCGCG-GCG-CGCGGua-GCUu -5'
31115 5' -63.9 NC_006560.1 + 4889 0.66 0.508831
Target:  5'- gGCGCcgGcGGGgGCCGCGuCGCgcUCGGGg -3'
miRNA:   3'- -CGCGa-C-CCCgCGGCGC-GCGguAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 5003 0.66 0.556172
Target:  5'- gGgGC-GGGGUGcCCGuCGcCGCCGUCGu- -3'
miRNA:   3'- -CgCGaCCCCGC-GGC-GC-GCGGUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 5468 0.68 0.395148
Target:  5'- gGCGCcGGGGCuCCGaGCGCgGUCGc- -3'
miRNA:   3'- -CGCGaCCCCGcGGCgCGCGgUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 5675 0.74 0.183843
Target:  5'- gGCGCgGGGGCgGCCgGCgGCGCCgcccGUCGAGg -3'
miRNA:   3'- -CGCGaCCCCG-CGG-CG-CGCGG----UAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 5761 0.72 0.232943
Target:  5'- uGCgGCcGGcGGCGCCGCGCGCaggcgCGGAa -3'
miRNA:   3'- -CG-CGaCC-CCGCGGCGCGCGgua--GCUU- -5'
31115 5' -63.9 NC_006560.1 + 6095 0.72 0.244001
Target:  5'- cGCGUcGaGGGCGCCGCGcCGCCGcCGc- -3'
miRNA:   3'- -CGCGaC-CCCGCGGCGC-GCGGUaGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.