miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 7178 0.65 0.992418
Target:  5'- cCCCGCCCCCGcgggcccg-CGGCccCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGc-GC- -5'
31128 5' -51.7 NC_006560.1 + 41663 0.65 0.992205
Target:  5'- gCCCGCgUCCGgugccgucgcgggCGGCGCGu -3'
miRNA:   3'- -GGGCGgGGGCaauuaauaa----GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 45750 0.66 0.991653
Target:  5'- uCgCGCCCCCGccaggGGUUGgcgugggggGGCGCGg -3'
miRNA:   3'- -GgGCGGGGGCaa---UUAAUaag------UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 45519 0.66 0.99107
Target:  5'- uCCgCGCCCCCGgccgccagcagCAcGCGCa -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaa--GU-CGCGc -5'
31128 5' -51.7 NC_006560.1 + 79977 0.66 0.99107
Target:  5'- cCCCGCCCCCcgauagccccgAGCGCc -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaagUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 73540 0.66 0.99107
Target:  5'- cCCCGacccaCCCCGaaccgcugcugCAGCGCGu -3'
miRNA:   3'- -GGGCg----GGGGCaauuaauaa--GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 52239 0.66 0.990581
Target:  5'- gCCUGgCCCCGgccggcg--CGGCGCa -3'
miRNA:   3'- -GGGCgGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 115958 0.66 0.990455
Target:  5'- aCCCcCCCCCGUccaacucaauaaAGCGCGu -3'
miRNA:   3'- -GGGcGGGGGCAauuaauaag---UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 180 0.66 0.990455
Target:  5'- uCCCGgCCCCGccggcGUUuuuUUCcGCGCGc -3'
miRNA:   3'- -GGGCgGGGGCaau--UAAu--AAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 83612 0.66 0.990455
Target:  5'- cCCCGCCUCCGcg-------CGGCgGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCG-CGC- -5'
31128 5' -51.7 NC_006560.1 + 29318 0.66 0.990455
Target:  5'- cCCCGCuCCCCGgacccaugGAgcccUC-GCGCGg -3'
miRNA:   3'- -GGGCG-GGGGCaa------UUaauaAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 150509 0.66 0.990455
Target:  5'- uCCCGgCCCCGccggcGUUuuuUUCcGCGCGc -3'
miRNA:   3'- -GGGCgGGGGCaau--UAAu--AAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 23940 0.66 0.990455
Target:  5'- cCUCGCCCCCG---------CGGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 131356 0.66 0.990329
Target:  5'- gCCGaCCCCCGggacccccu-GGCGCGg -3'
miRNA:   3'- gGGC-GGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 951 0.66 0.990071
Target:  5'- cCCCGCCCCCGaucuucacUAggCcugcacgcccgggGGCGCGc -3'
miRNA:   3'- -GGGCGGGGGCaauua---AUaaG-------------UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 118379 0.66 0.990071
Target:  5'- gCCUggaGCCCCCGggGGgcgggcgGUUCgggcccgaccccggGGCGCGg -3'
miRNA:   3'- -GGG---CGGGGGCaaUUaa-----UAAG--------------UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 94523 0.66 0.98994
Target:  5'- gCgGCCCCgCGgacgag--UCGGCGCGc -3'
miRNA:   3'- gGgCGGGG-GCaauuaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 83420 0.66 0.989808
Target:  5'- gCCCGCCUgCUGgacugcaccgagggUCGGCGCGg -3'
miRNA:   3'- -GGGCGGG-GGCaauuaaua------AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 74663 0.66 0.98954
Target:  5'- gCCgCGCCCCCGgaGGUgcgcgccgcccuGCGCGc -3'
miRNA:   3'- -GG-GCGGGGGCaaUUAauaagu------CGCGC- -5'
31128 5' -51.7 NC_006560.1 + 121548 0.66 0.989127
Target:  5'- uCCCGCCCCC---------UCAGCugggGCGg -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaAGUCG----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.