miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 150509 0.66 0.990455
Target:  5'- uCCCGgCCCCGccggcGUUuuuUUCcGCGCGc -3'
miRNA:   3'- -GGGCgGGGGCaau--UAAu--AAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 150432 0.79 0.479664
Target:  5'- cCCCGCCCCCGcggccgcggcCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa-GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 150330 0.66 0.987659
Target:  5'- cCCCGCgccgcguuUCCCGgcGGggcgGUUCGGCgGCGg -3'
miRNA:   3'- -GGGCG--------GGGGCaaUUaa--UAAGUCG-CGC- -5'
31128 5' -51.7 NC_006560.1 + 147676 0.66 0.988264
Target:  5'- aCCGCCUCCucggcc---UCGGCGCGc -3'
miRNA:   3'- gGGCGGGGGcaauuaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 147619 0.67 0.984269
Target:  5'- gCCGCcuCCCCGggGAgg---CGGUGCGu -3'
miRNA:   3'- gGGCG--GGGGCaaUUaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 147460 0.66 0.986043
Target:  5'- uCCCGCCacccaCCGgcgUGGUUGUcgucgUCGGUGUc -3'
miRNA:   3'- -GGGCGGg----GGCa--AUUAAUA-----AGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 144194 0.67 0.980214
Target:  5'- cCCCGaCCCCCGggc------CGGCGCc -3'
miRNA:   3'- -GGGC-GGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 142432 0.69 0.944677
Target:  5'- cCCCGCCgCCCGgcgcggcggCcGCGCGg -3'
miRNA:   3'- -GGGCGG-GGGCaauuaauaaGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 142171 0.69 0.938555
Target:  5'- cCCCGCCCCgCGcgggcccUAAUggga-GGCGCGg -3'
miRNA:   3'- -GGGCGGGG-GCa------AUUAauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 141750 0.78 0.521006
Target:  5'- cCCCGCCCCCGcgcccgcgUUGGCGCGc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 140391 0.8 0.433563
Target:  5'- gUCGUCCCCGggGGggGUUCAGCGCc -3'
miRNA:   3'- gGGCGGGGGCaaUUaaUAAGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 139257 0.74 0.756036
Target:  5'- gCCCGgaCCCCCGggGGcgcgcggUcgUCGGCGCGg -3'
miRNA:   3'- -GGGC--GGGGGCaaUUa------AuaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 135459 0.69 0.955686
Target:  5'- gCCGCCCCCGgagcagccgcCGGUGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa-GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 134245 0.69 0.942372
Target:  5'- gCCCGCCCCCGcggcccgcccgAAgccgggCAGgGCGg -3'
miRNA:   3'- -GGGCGGGGGCaa---------UUaauaa-GUCgCGC- -5'
31128 5' -51.7 NC_006560.1 + 132033 0.68 0.964433
Target:  5'- -aCGCCCCCGgccgccgcgCuGCGCGg -3'
miRNA:   3'- ggGCGGGGGCaauuaauaaGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 131356 0.66 0.990329
Target:  5'- gCCGaCCCCCGggacccccu-GGCGCGg -3'
miRNA:   3'- gGGC-GGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 129580 0.67 0.980214
Target:  5'- gCCUGCUCUCGgagGAggcgGUgCGGCGCGu -3'
miRNA:   3'- -GGGCGGGGGCaa-UUaa--UAaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 125511 0.71 0.893705
Target:  5'- cCCCGCCUCCGcgccggccgCGGUGCGc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 125026 0.68 0.971893
Target:  5'- gCCGCCCaCCGgcggcugg-UGGCGCGg -3'
miRNA:   3'- gGGCGGG-GGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 124300 0.68 0.95986
Target:  5'- gCCGCCCCaCGUgcaggcgGAgacGUUCgAGCGCc -3'
miRNA:   3'- gGGCGGGG-GCAa------UUaa-UAAG-UCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.