miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31134 5' -62.9 NC_006560.1 + 65909 0.66 0.62329
Target:  5'- aGGCGCacguGCGGGCcgugGGC-CGCCCccgcagGUCCg -3'
miRNA:   3'- gCCGCGc---CGCUCG----CUGuGCGGG------CAGG- -5'
31134 5' -62.9 NC_006560.1 + 50140 0.66 0.632924
Target:  5'- gGGgGCGGCGAcuccgacgggGCGGaggaaccgccccCGCGCCgccgucgggCGUCCa -3'
miRNA:   3'- gCCgCGCCGCU----------CGCU------------GUGCGG---------GCAGG- -5'
31134 5' -62.9 NC_006560.1 + 139605 0.66 0.62329
Target:  5'- gGGCGCGaGCGAGCGcucccggagguACugGUUCG-Cg -3'
miRNA:   3'- gCCGCGC-CGCUCGC-----------UGugCGGGCaGg -5'
31134 5' -62.9 NC_006560.1 + 41224 0.66 0.613662
Target:  5'- uGGCGaagcacugcUGGCacAGCGACACgcacaGCCCGUUCc -3'
miRNA:   3'- gCCGC---------GCCGc-UCGCUGUG-----CGGGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 55031 0.66 0.613662
Target:  5'- gGcGCGCGGCGAGaCGA-GCGacggaUCGUCUg -3'
miRNA:   3'- gC-CGCGCCGCUC-GCUgUGCg----GGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 75363 0.66 0.62329
Target:  5'- gCGGCGCGccgaCGAGCugGAgGCGgCCG-CCg -3'
miRNA:   3'- -GCCGCGCc---GCUCG--CUgUGCgGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 61595 0.66 0.665635
Target:  5'- uCGGCGCugaaGCGcacguaguucucgauGGCGGCcagggcCGCCgCGUCCa -3'
miRNA:   3'- -GCCGCGc---CGC---------------UCGCUGu-----GCGG-GCAGG- -5'
31134 5' -62.9 NC_006560.1 + 76297 0.66 0.613662
Target:  5'- aGGCccucGCGGCccacGAGCGACGCGCgcagagcgaggCCGagagCCu -3'
miRNA:   3'- gCCG----CGCCG----CUCGCUGUGCG-----------GGCa---GG- -5'
31134 5' -62.9 NC_006560.1 + 82617 0.66 0.613662
Target:  5'- cCGGacgGCGGCuGGGCGGCggggGCGUUCGaCCg -3'
miRNA:   3'- -GCCg--CGCCG-CUCGCUG----UGCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 5273 0.66 0.613662
Target:  5'- gCGGCgGCGGCGAGguCGGCgucgGCGUcgUCGUCg -3'
miRNA:   3'- -GCCG-CGCCGCUC--GCUG----UGCG--GGCAGg -5'
31134 5' -62.9 NC_006560.1 + 5306 0.66 0.62329
Target:  5'- nCGGCcgccGCGuGCGAcgGCGGCG-GCCCcUCCg -3'
miRNA:   3'- -GCCG----CGC-CGCU--CGCUGUgCGGGcAGG- -5'
31134 5' -62.9 NC_006560.1 + 118472 0.66 0.613662
Target:  5'- uGGCccCGGgGAGCGA-GCGCCCGcgCUc -3'
miRNA:   3'- gCCGc-GCCgCUCGCUgUGCGGGCa-GG- -5'
31134 5' -62.9 NC_006560.1 + 2747 0.66 0.6204
Target:  5'- aCGGCGcCGGCGAaggccaggucGCGcguggagagcaggaGCACGCCCugcgcgCCc -3'
miRNA:   3'- -GCCGC-GCCGCU----------CGC--------------UGUGCGGGca----GG- -5'
31134 5' -62.9 NC_006560.1 + 26675 0.66 0.613662
Target:  5'- gGGcCGCGGgGGgggacggggcccGCGACGaGCCCGcgCCg -3'
miRNA:   3'- gCC-GCGCCgCU------------CGCUGUgCGGGCa-GG- -5'
31134 5' -62.9 NC_006560.1 + 58693 0.66 0.614624
Target:  5'- uCGGCGCGGCGcccuccucccucgccGCGAagguCACGCagaCG-CCg -3'
miRNA:   3'- -GCCGCGCCGCu--------------CGCU----GUGCGg--GCaGG- -5'
31134 5' -62.9 NC_006560.1 + 27773 0.66 0.613662
Target:  5'- uCGaGUGCGGCcacCGACgccGCGCCCGgCCg -3'
miRNA:   3'- -GC-CGCGCCGcucGCUG---UGCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 118254 0.66 0.617512
Target:  5'- gGGCGCGGaccgccgcgccgcccCGGcCGugGCGUCCGggcUCCg -3'
miRNA:   3'- gCCGCGCC---------------GCUcGCugUGCGGGC---AGG- -5'
31134 5' -62.9 NC_006560.1 + 106440 0.66 0.62329
Target:  5'- aGGCGgucGCGGGCGAC-CGCCgGcUCUc -3'
miRNA:   3'- gCCGCgc-CGCUCGCUGuGCGGgC-AGG- -5'
31134 5' -62.9 NC_006560.1 + 113664 0.66 0.631961
Target:  5'- gGGCuGCGG-GAGCuGGCccggaccGCGCCCcucGUCCc -3'
miRNA:   3'- gCCG-CGCCgCUCG-CUG-------UGCGGG---CAGG- -5'
31134 5' -62.9 NC_006560.1 + 18828 0.66 0.62329
Target:  5'- gGGUGCGuCGGGCGGCuccgcgAgGCCgCGUCUc -3'
miRNA:   3'- gCCGCGCcGCUCGCUG------UgCGG-GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.