miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31134 5' -62.9 NC_006560.1 + 61595 0.66 0.665635
Target:  5'- uCGGCGCugaaGCGcacguaguucucgauGGCGGCcagggcCGCCgCGUCCa -3'
miRNA:   3'- -GCCGCGc---CGC---------------UCGCUGu-----GCGG-GCAGG- -5'
31134 5' -62.9 NC_006560.1 + 1110 0.78 0.131129
Target:  5'- gCGGCGCGaGCcccGCGACGCGCCCcccUCCg -3'
miRNA:   3'- -GCCGCGC-CGcu-CGCUGUGCGGGc--AGG- -5'
31134 5' -62.9 NC_006560.1 + 1612 0.78 0.131129
Target:  5'- cCGGCGCGcgcucuGCGGGCuuCGCGCCUGUCUg -3'
miRNA:   3'- -GCCGCGC------CGCUCGcuGUGCGGGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 124791 0.78 0.131129
Target:  5'- gCGGCGCuucguguucuGCGAgcccgGCGACGCGCCCGUCg -3'
miRNA:   3'- -GCCGCGc---------CGCU-----CGCUGUGCGGGCAGg -5'
31134 5' -62.9 NC_006560.1 + 130311 0.78 0.137672
Target:  5'- cCGGCGCGGUGgcGGCGGCGCggGCCgcggCGUCCc -3'
miRNA:   3'- -GCCGCGCCGC--UCGCUGUG--CGG----GCAGG- -5'
31134 5' -62.9 NC_006560.1 + 16300 0.78 0.137672
Target:  5'- gGGCGCGGCgGGGCG-CGgGCCCGcgCCc -3'
miRNA:   3'- gCCGCGCCG-CUCGCuGUgCGGGCa-GG- -5'
31134 5' -62.9 NC_006560.1 + 2465 0.77 0.144513
Target:  5'- aGGCGCGGCG-GCGGCGCGUCgGg-- -3'
miRNA:   3'- gCCGCGCCGCuCGCUGUGCGGgCagg -5'
31134 5' -62.9 NC_006560.1 + 9593 0.77 0.144513
Target:  5'- aGGCGCGGCGAGCGgaGCGCGgggcgcggccCCUGgggCCg -3'
miRNA:   3'- gCCGCGCCGCUCGC--UGUGC----------GGGCa--GG- -5'
31134 5' -62.9 NC_006560.1 + 15292 0.77 0.14805
Target:  5'- cCGGCGCGGCGgcGGUGGCcucggGCGCCCccUCCg -3'
miRNA:   3'- -GCCGCGCCGC--UCGCUG-----UGCGGGc-AGG- -5'
31134 5' -62.9 NC_006560.1 + 14843 0.79 0.118896
Target:  5'- gCGGCGgGGgGAGCGugGCGgCCGggcgCCg -3'
miRNA:   3'- -GCCGCgCCgCUCGCugUGCgGGCa---GG- -5'
31134 5' -62.9 NC_006560.1 + 70794 0.79 0.116009
Target:  5'- gCGGCGcCGGCcGGCaGCACGCCCGaCCa -3'
miRNA:   3'- -GCCGC-GCCGcUCGcUGUGCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 114632 0.79 0.110428
Target:  5'- aCGGCGaCGGCGAccaGCGACgugcaguucaaACGCCCGcCCg -3'
miRNA:   3'- -GCCGC-GCCGCU---CGCUG-----------UGCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 3975 0.84 0.051937
Target:  5'- gCGGCGCuGCGcGGCGACACGCCCGcggcgCCg -3'
miRNA:   3'- -GCCGCGcCGC-UCGCUGUGCGGGCa----GG- -5'
31134 5' -62.9 NC_006560.1 + 25842 0.84 0.054652
Target:  5'- aCGGCGUGGcCGGGCG-CGCGCCCGgggCCc -3'
miRNA:   3'- -GCCGCGCC-GCUCGCuGUGCGGGCa--GG- -5'
31134 5' -62.9 NC_006560.1 + 5680 0.82 0.07596
Target:  5'- gGGgGCGGCcGGCGGCGcCGCCCGUCg -3'
miRNA:   3'- gCCgCGCCGcUCGCUGU-GCGGGCAGg -5'
31134 5' -62.9 NC_006560.1 + 4706 0.81 0.078682
Target:  5'- gCGcGCGCGGCGgcgcucgcugcgcccGGCGGCgACGCCCGUCUc -3'
miRNA:   3'- -GC-CGCGCCGC---------------UCGCUG-UGCGGGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 51975 0.81 0.088298
Target:  5'- cCGG-GCGGCGGGCGGCGgGCCUG-CCg -3'
miRNA:   3'- -GCCgCGCCGCUCGCUGUgCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 133225 0.8 0.092358
Target:  5'- cCGGCGgucCGGCGugacgucaacccGCGACACGCCCGUCg -3'
miRNA:   3'- -GCCGC---GCCGCu-----------CGCUGUGCGGGCAGg -5'
31134 5' -62.9 NC_006560.1 + 99606 0.8 0.095162
Target:  5'- cCGGCGCGGCGgggGGCGGCugG-CgGUCCg -3'
miRNA:   3'- -GCCGCGCCGC---UCGCUGugCgGgCAGG- -5'
31134 5' -62.9 NC_006560.1 + 142197 0.79 0.110428
Target:  5'- aGGCGCGGCcuccGGGCGGCGCGCCa--CCa -3'
miRNA:   3'- gCCGCGCCG----CUCGCUGUGCGGgcaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.