Results 1 - 20 of 534 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31134 | 5' | -62.9 | NC_006560.1 | + | 145804 | 0.85 | 0.044556 |
Target: 5'- cCGGgGCGGCGGGC-ACACGCCCGgCCu -3' miRNA: 3'- -GCCgCGCCGCUCGcUGUGCGGGCaGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 3975 | 0.84 | 0.051937 |
Target: 5'- gCGGCGCuGCGcGGCGACACGCCCGcggcgCCg -3' miRNA: 3'- -GCCGCGcCGC-UCGCUGUGCGGGCa----GG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 25842 | 0.84 | 0.054652 |
Target: 5'- aCGGCGUGGcCGGGCG-CGCGCCCGgggCCc -3' miRNA: 3'- -GCCGCGCC-GCUCGCuGUGCGGGCa--GG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 5680 | 0.82 | 0.07596 |
Target: 5'- gGGgGCGGCcGGCGGCGcCGCCCGUCg -3' miRNA: 3'- gCCgCGCCGcUCGCUGU-GCGGGCAGg -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 4706 | 0.81 | 0.078682 |
Target: 5'- gCGcGCGCGGCGgcgcucgcugcgcccGGCGGCgACGCCCGUCUc -3' miRNA: 3'- -GC-CGCGCCGC---------------UCGCUG-UGCGGGCAGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 51975 | 0.81 | 0.088298 |
Target: 5'- cCGG-GCGGCGGGCGGCGgGCCUG-CCg -3' miRNA: 3'- -GCCgCGCCGCUCGCUGUgCGGGCaGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 133225 | 0.8 | 0.092358 |
Target: 5'- cCGGCGgucCGGCGugacgucaacccGCGACACGCCCGUCg -3' miRNA: 3'- -GCCGC---GCCGCu-----------CGCUGUGCGGGCAGg -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 99606 | 0.8 | 0.095162 |
Target: 5'- cCGGCGCGGCGgggGGCGGCugG-CgGUCCg -3' miRNA: 3'- -GCCGCGCCGC---UCGCUGugCgGgCAGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 142197 | 0.79 | 0.110428 |
Target: 5'- aGGCGCGGCcuccGGGCGGCGCGCCa--CCa -3' miRNA: 3'- gCCGCGCCG----CUCGCUGUGCGGgcaGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 114632 | 0.79 | 0.110428 |
Target: 5'- aCGGCGaCGGCGAccaGCGACgugcaguucaaACGCCCGcCCg -3' miRNA: 3'- -GCCGC-GCCGCU---CGCUG-----------UGCGGGCaGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 70794 | 0.79 | 0.116009 |
Target: 5'- gCGGCGcCGGCcGGCaGCACGCCCGaCCa -3' miRNA: 3'- -GCCGC-GCCGcUCGcUGUGCGGGCaGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 14843 | 0.79 | 0.118896 |
Target: 5'- gCGGCGgGGgGAGCGugGCGgCCGggcgCCg -3' miRNA: 3'- -GCCGCgCCgCUCGCugUGCgGGCa---GG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 1110 | 0.78 | 0.131129 |
Target: 5'- gCGGCGCGaGCcccGCGACGCGCCCcccUCCg -3' miRNA: 3'- -GCCGCGC-CGcu-CGCUGUGCGGGc--AGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 1612 | 0.78 | 0.131129 |
Target: 5'- cCGGCGCGcgcucuGCGGGCuuCGCGCCUGUCUg -3' miRNA: 3'- -GCCGCGC------CGCUCGcuGUGCGGGCAGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 124791 | 0.78 | 0.131129 |
Target: 5'- gCGGCGCuucguguucuGCGAgcccgGCGACGCGCCCGUCg -3' miRNA: 3'- -GCCGCGc---------CGCU-----CGCUGUGCGGGCAGg -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 16300 | 0.78 | 0.137672 |
Target: 5'- gGGCGCGGCgGGGCG-CGgGCCCGcgCCc -3' miRNA: 3'- gCCGCGCCG-CUCGCuGUgCGGGCa-GG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 130311 | 0.78 | 0.137672 |
Target: 5'- cCGGCGCGGUGgcGGCGGCGCggGCCgcggCGUCCc -3' miRNA: 3'- -GCCGCGCCGC--UCGCUGUG--CGG----GCAGG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 2465 | 0.77 | 0.144513 |
Target: 5'- aGGCGCGGCG-GCGGCGCGUCgGg-- -3' miRNA: 3'- gCCGCGCCGCuCGCUGUGCGGgCagg -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 9593 | 0.77 | 0.144513 |
Target: 5'- aGGCGCGGCGAGCGgaGCGCGgggcgcggccCCUGgggCCg -3' miRNA: 3'- gCCGCGCCGCUCGC--UGUGC----------GGGCa--GG- -5' |
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31134 | 5' | -62.9 | NC_006560.1 | + | 15292 | 0.77 | 0.14805 |
Target: 5'- cCGGCGCGGCGgcGGUGGCcucggGCGCCCccUCCg -3' miRNA: 3'- -GCCGCGCCGC--UCGCUG-----UGCGGGc-AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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