miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31134 5' -62.9 NC_006560.1 + 57 0.68 0.52826
Target:  5'- gGGCGCguuuggGGCGGGUccgGGCGgGCCC-UCCc -3'
miRNA:   3'- gCCGCG------CCGCUCG---CUGUgCGGGcAGG- -5'
31134 5' -62.9 NC_006560.1 + 123 0.69 0.439098
Target:  5'- cCGGCGCGGguuUGGGCGGgGCcgGCCCcgccccgcgGUCCc -3'
miRNA:   3'- -GCCGCGCC---GCUCGCUgUG--CGGG---------CAGG- -5'
31134 5' -62.9 NC_006560.1 + 453 0.73 0.25949
Target:  5'- gCGGCcucccCGGCGGGCGGCcagucACcCCCGUCCc -3'
miRNA:   3'- -GCCGc----GCCGCUCGCUG-----UGcGGGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 519 0.75 0.216221
Target:  5'- gGGCGcCGGgGGGCGGCggccggccGCGCCCcggGUCCc -3'
miRNA:   3'- gCCGC-GCCgCUCGCUG--------UGCGGG---CAGG- -5'
31134 5' -62.9 NC_006560.1 + 670 0.7 0.389896
Target:  5'- cCGGCGCGcccgcggcGCGGGCucguCGCGggcCCCGUCCc -3'
miRNA:   3'- -GCCGCGC--------CGCUCGcu--GUGC---GGGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 1110 0.78 0.131129
Target:  5'- gCGGCGCGaGCcccGCGACGCGCCCcccUCCg -3'
miRNA:   3'- -GCCGCGC-CGcu-CGCUGUGCGGGc--AGG- -5'
31134 5' -62.9 NC_006560.1 + 1506 0.68 0.490757
Target:  5'- cCGGCGggagcgcgugcauCGGgcccCGGGCG-CGCGCCCGgCCa -3'
miRNA:   3'- -GCCGC-------------GCC----GCUCGCuGUGCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 1612 0.78 0.131129
Target:  5'- cCGGCGCGcgcucuGCGGGCuuCGCGCCUGUCUg -3'
miRNA:   3'- -GCCGCGC------CGCUCGcuGUGCGGGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 1882 0.68 0.491657
Target:  5'- gGGCGgGggucGCGGGCGGCGgCGCCggcuaccaGUCCu -3'
miRNA:   3'- gCCGCgC----CGCUCGCUGU-GCGGg-------CAGG- -5'
31134 5' -62.9 NC_006560.1 + 2021 0.75 0.221272
Target:  5'- uCGGCGuCGGCGAGCagcgugucGGCGCGgCCGgcggCCc -3'
miRNA:   3'- -GCCGC-GCCGCUCG--------CUGUGCgGGCa---GG- -5'
31134 5' -62.9 NC_006560.1 + 2070 0.69 0.464991
Target:  5'- gCGGCGCGGCG-GCGGg--GUCCGggggCCc -3'
miRNA:   3'- -GCCGCGCCGCuCGCUgugCGGGCa---GG- -5'
31134 5' -62.9 NC_006560.1 + 2102 0.71 0.374316
Target:  5'- uCGGCGCGcagcaCGAGCGGCGCGgCgucgggGUCCg -3'
miRNA:   3'- -GCCGCGCc----GCUCGCUGUGCgGg-----CAGG- -5'
31134 5' -62.9 NC_006560.1 + 2171 0.72 0.321117
Target:  5'- -aGCGCGGCGGGCagggccucgggcccGGCGCGCgCGgCCg -3'
miRNA:   3'- gcCGCGCCGCUCG--------------CUGUGCGgGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 2268 0.68 0.491657
Target:  5'- aGGCGCGGU--GCGAgUGCGCCuCG-CCg -3'
miRNA:   3'- gCCGCGCCGcuCGCU-GUGCGG-GCaGG- -5'
31134 5' -62.9 NC_006560.1 + 2327 0.75 0.206415
Target:  5'- uCGcGCGCgGGCGAgucgGCGGCGCGgCCGUCg -3'
miRNA:   3'- -GC-CGCG-CCGCU----CGCUGUGCgGGCAGg -5'
31134 5' -62.9 NC_006560.1 + 2388 0.7 0.414048
Target:  5'- -cGCGCGGCGgcAGCGGCACGgCgGUg- -3'
miRNA:   3'- gcCGCGCCGC--UCGCUGUGCgGgCAgg -5'
31134 5' -62.9 NC_006560.1 + 2423 0.66 0.661796
Target:  5'- aGGCGCGuGCGcacgcgguAGCG-CACGUugCCG-CCg -3'
miRNA:   3'- gCCGCGC-CGC--------UCGCuGUGCG--GGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 2465 0.77 0.144513
Target:  5'- aGGCGCGGCG-GCGGCGCGUCgGg-- -3'
miRNA:   3'- gCCGCGCCGCuCGCUGUGCGGgCagg -5'
31134 5' -62.9 NC_006560.1 + 2558 0.71 0.366685
Target:  5'- aCGGCGCGGCGcAG-GuCGCGCgCGgcgggCCa -3'
miRNA:   3'- -GCCGCGCCGC-UCgCuGUGCGgGCa----GG- -5'
31134 5' -62.9 NC_006560.1 + 2641 0.76 0.166936
Target:  5'- gCGGCGC-GCGA-CGACGgGCCCGUCg -3'
miRNA:   3'- -GCCGCGcCGCUcGCUGUgCGGGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.