miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31185 5' -60.3 NC_006560.1 + 104192 0.66 0.690849
Target:  5'- cUCGUGGGGAGCc---UGuCGCUGCc- -3'
miRNA:   3'- aAGCGCCCCUCGaccaAC-GCGACGuc -5'
31185 5' -60.3 NC_006560.1 + 77659 0.66 0.690849
Target:  5'- -cCGCuGGGacGAGCUGGgguggGCGC-GCGGa -3'
miRNA:   3'- aaGCG-CCC--CUCGACCaa---CGCGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 37504 0.66 0.680813
Target:  5'- gUUGCGGGGuGggGGUUuggcGCGCcGCGGc -3'
miRNA:   3'- aAGCGCCCCuCgaCCAA----CGCGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 147568 0.66 0.680813
Target:  5'- --gGCGGGGAGa-GGgcGCGCacggUGCGGc -3'
miRNA:   3'- aagCGCCCCUCgaCCaaCGCG----ACGUC- -5'
31185 5' -60.3 NC_006560.1 + 137530 0.66 0.680813
Target:  5'- -gCGCGGcGGGCUcauGUccgugGCGCUGCAGa -3'
miRNA:   3'- aaGCGCCcCUCGAc--CAa----CGCGACGUC- -5'
31185 5' -60.3 NC_006560.1 + 146822 0.66 0.660633
Target:  5'- --gGCGGGGucugGGUgUGGgcGUGCUGCGGc -3'
miRNA:   3'- aagCGCCCC----UCG-ACCaaCGCGACGUC- -5'
31185 5' -60.3 NC_006560.1 + 148393 0.66 0.650505
Target:  5'- gUC-CGGGGAGCgGGgacgcgggGCGCUccggGCGGg -3'
miRNA:   3'- aAGcGCCCCUCGaCCaa------CGCGA----CGUC- -5'
31185 5' -60.3 NC_006560.1 + 34394 0.66 0.650505
Target:  5'- -cCGCGGGGGGggGGgugGgGCgGCGGc -3'
miRNA:   3'- aaGCGCCCCUCgaCCaa-CgCGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 26622 0.66 0.650505
Target:  5'- -cCGCGGGGGGggGGgacgGgGCcGCGGg -3'
miRNA:   3'- aaGCGCCCCUCgaCCaa--CgCGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 140487 0.66 0.647463
Target:  5'- --gGCGGaGGAGgUGGggGCggcgggggagaaggGCUGCGGg -3'
miRNA:   3'- aagCGCC-CCUCgACCaaCG--------------CGACGUC- -5'
31185 5' -60.3 NC_006560.1 + 101770 0.67 0.630213
Target:  5'- gUCGCGGGGcacgucGCcGGggGCGgCgGCAGg -3'
miRNA:   3'- aAGCGCCCCu-----CGaCCaaCGC-GaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 71335 0.67 0.620066
Target:  5'- cUCGCGGGG-GCgGGggaggGgGCgGCGGg -3'
miRNA:   3'- aAGCGCCCCuCGaCCaa---CgCGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 99867 0.67 0.620066
Target:  5'- gUCGcCGGGGGGCgcgggGGUcgugGCgGCgGCGGg -3'
miRNA:   3'- aAGC-GCCCCUCGa----CCAa---CG-CGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 16373 0.67 0.620066
Target:  5'- -gCGagGGGGGGCaUGGcgGCGCggGCGGg -3'
miRNA:   3'- aaGCg-CCCCUCG-ACCaaCGCGa-CGUC- -5'
31185 5' -60.3 NC_006560.1 + 95159 0.67 0.609927
Target:  5'- cUCGCuGGcGAGcCUGGg-GCGCUGCGu -3'
miRNA:   3'- aAGCGcCC-CUC-GACCaaCGCGACGUc -5'
31185 5' -60.3 NC_006560.1 + 85563 0.67 0.599805
Target:  5'- --gGCGGGGgcggcucgggGGCgGGggGCGCgGCGGg -3'
miRNA:   3'- aagCGCCCC----------UCGaCCaaCGCGaCGUC- -5'
31185 5' -60.3 NC_006560.1 + 79808 0.67 0.599805
Target:  5'- cUCGaUGGGGGGCgcGGUgGCGCcggGCGGc -3'
miRNA:   3'- aAGC-GCCCCUCGa-CCAaCGCGa--CGUC- -5'
31185 5' -60.3 NC_006560.1 + 115453 0.67 0.589707
Target:  5'- aUCGUGGcGcGGCUGGUgGCGCgcgGCAu -3'
miRNA:   3'- aAGCGCC-CcUCGACCAaCGCGa--CGUc -5'
31185 5' -60.3 NC_006560.1 + 132233 0.68 0.569607
Target:  5'- -gCGCGGGGccCUGGcgGgGCUGUGGg -3'
miRNA:   3'- aaGCGCCCCucGACCaaCgCGACGUC- -5'
31185 5' -60.3 NC_006560.1 + 69452 0.68 0.559619
Target:  5'- -cCGCGGGGcuGGCgGGggGCGUccugagGCAGa -3'
miRNA:   3'- aaGCGCCCC--UCGaCCaaCGCGa-----CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.