miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 5' -60.7 NC_006560.1 + 4756 0.66 0.653783
Target:  5'- ----cGGCCcgcGGCGGCgGCGGcGCGGGGu -3'
miRNA:   3'- uagaaCCGG---UCGUCG-CGCC-CGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 78248 0.66 0.653783
Target:  5'- gGUCg-GGCCGggcccccgacccGCAGgGCGGGCGcGAGg -3'
miRNA:   3'- -UAGaaCCGGU------------CGUCgCGCCCGCuCUU- -5'
31186 5' -60.7 NC_006560.1 + 132235 0.66 0.653783
Target:  5'- -gCggGGCCcuGGCGGgGCugugGGGCGAGGAc -3'
miRNA:   3'- uaGaaCCGG--UCGUCgCG----CCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 5763 0.66 0.653783
Target:  5'- ----cGGCCGGCGGCGCcgcgcgcaGGCGcGGAAg -3'
miRNA:   3'- uagaaCCGGUCGUCGCGc-------CCGC-UCUU- -5'
31186 5' -60.7 NC_006560.1 + 3759 0.66 0.653783
Target:  5'- ----gGGCgCGGCGGCGCcgcgcGGCGGGAc -3'
miRNA:   3'- uagaaCCG-GUCGUCGCGc----CCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 33272 0.66 0.64358
Target:  5'- gGUCgggGGCCugGGCGGCGgGGGUuGGGu -3'
miRNA:   3'- -UAGaa-CCGG--UCGUCGCgCCCGcUCUu -5'
31186 5' -60.7 NC_006560.1 + 147369 0.66 0.64358
Target:  5'- aGUCggGGUgGGgGGUGCGGGgGGGGc -3'
miRNA:   3'- -UAGaaCCGgUCgUCGCGCCCgCUCUu -5'
31186 5' -60.7 NC_006560.1 + 75148 0.66 0.64358
Target:  5'- ---cUGGCggCGGCGGUGCGGcGgGAGAAc -3'
miRNA:   3'- uagaACCG--GUCGUCGCGCC-CgCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 20599 0.66 0.64358
Target:  5'- ----cGGUCGGCauGGCGCGGGUGGuGGGg -3'
miRNA:   3'- uagaaCCGGUCG--UCGCGCCCGCU-CUU- -5'
31186 5' -60.7 NC_006560.1 + 20895 0.66 0.640517
Target:  5'- ----cGGCgCGGCguucccgggcggugGGCGCGGaGCGAGGAg -3'
miRNA:   3'- uagaaCCG-GUCG--------------UCGCGCC-CGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 17066 0.66 0.633367
Target:  5'- ---aUGGCgcuCAGCAGCugGCGGGCGAc-- -3'
miRNA:   3'- uagaACCG---GUCGUCG--CGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 32135 0.66 0.633367
Target:  5'- -cCggGGCCGGUcacGGC-CGGGCGGGGc -3'
miRNA:   3'- uaGaaCCGGUCG---UCGcGCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 27271 0.66 0.633367
Target:  5'- ----cGGCCgcGGCcGCGgGGGCGGGGc -3'
miRNA:   3'- uagaaCCGG--UCGuCGCgCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 129635 0.66 0.623154
Target:  5'- -----cGCCGGCGGggcCGUGGGCGAGGc -3'
miRNA:   3'- uagaacCGGUCGUC---GCGCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 12706 0.66 0.623154
Target:  5'- ---gUGGUCGGCgggGGUGgGGGCGGGGc -3'
miRNA:   3'- uagaACCGGUCG---UCGCgCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 59384 0.66 0.623154
Target:  5'- ---aUGGCUGGUGGUGCGGGaGGGGGg -3'
miRNA:   3'- uagaACCGGUCGUCGCGCCCgCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 109349 0.66 0.612948
Target:  5'- gGUUgUGGCCcuCGGUGUGGGCgGAGAu -3'
miRNA:   3'- -UAGaACCGGucGUCGCGCCCG-CUCUu -5'
31186 5' -60.7 NC_006560.1 + 3374 0.66 0.612948
Target:  5'- ----cGGCgGGCGG-GCGGGCGGGc- -3'
miRNA:   3'- uagaaCCGgUCGUCgCGCCCGCUCuu -5'
31186 5' -60.7 NC_006560.1 + 26481 0.66 0.612948
Target:  5'- ----cGGCCGGCGGCcccggcgggggGCGGGCGcgcGAGg -3'
miRNA:   3'- uagaaCCGGUCGUCG-----------CGCCCGCu--CUU- -5'
31186 5' -60.7 NC_006560.1 + 107104 0.66 0.602755
Target:  5'- ---cUGGCCcGCGGCGUGGGCu---- -3'
miRNA:   3'- uagaACCGGuCGUCGCGCCCGcucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.