Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3120 | 3' | -63.5 | NC_001493.1 | + | 61476 | 0.66 | 0.56845 |
Target: 5'- cGCGCGGcUGUUCGGCCGgGGugUCc- -3' miRNA: 3'- -CGCGCCaGCGGGUCGGUgCCugGGcc -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 29294 | 0.66 | 0.57799 |
Target: 5'- aCGCGGggGCaCGGCC-CGGACCaaaaaGGa -3' miRNA: 3'- cGCGCCagCGgGUCGGuGCCUGGg----CC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 110355 | 0.66 | 0.597167 |
Target: 5'- cCGUGGUCGCCCuGgUugGGcGCuUCGGu -3' miRNA: 3'- cGCGCCAGCGGGuCgGugCC-UG-GGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 79291 | 0.66 | 0.605829 |
Target: 5'- uGCGCGGaCGCgaacacgCUGGuCCA-GGACCUGGa -3' miRNA: 3'- -CGCGCCaGCG-------GGUC-GGUgCCUGGGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 63169 | 0.66 | 0.597167 |
Target: 5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3' miRNA: 3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 63214 | 0.66 | 0.597167 |
Target: 5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3' miRNA: 3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 63259 | 0.66 | 0.597167 |
Target: 5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3' miRNA: 3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 63304 | 0.66 | 0.597167 |
Target: 5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3' miRNA: 3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 63385 | 0.66 | 0.597167 |
Target: 5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3' miRNA: 3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 63508 | 0.66 | 0.597167 |
Target: 5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3' miRNA: 3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 36229 | 0.66 | 0.597167 |
Target: 5'- uGCGCGGgggUGCUCAGUggggcggguugCGCGGACgaUUGGg -3' miRNA: 3'- -CGCGCCa--GCGGGUCG-----------GUGCCUG--GGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 29385 | 0.66 | 0.587564 |
Target: 5'- cCGCGGgCGCUCGgacuGUCGCGGACCa-- -3' miRNA: 3'- cGCGCCaGCGGGU----CGGUGCCUGGgcc -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 29506 | 0.66 | 0.56845 |
Target: 5'- ----cGUUGCuCCAGCuCGCGGACCCuGGc -3' miRNA: 3'- cgcgcCAGCG-GGUCG-GUGCCUGGG-CC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 40657 | 0.66 | 0.57799 |
Target: 5'- cGUGCuacgCGUCCacGGCU-CGGACCCGGg -3' miRNA: 3'- -CGCGcca-GCGGG--UCGGuGCCUGGGCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 108782 | 0.66 | 0.57799 |
Target: 5'- gGCGCGGcuccgaUCacgggaggagguGCCgGGCC-UGGACCCGa -3' miRNA: 3'- -CGCGCC------AG------------CGGgUCGGuGCCUGGGCc -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 13412 | 0.66 | 0.587564 |
Target: 5'- cGCGCGGUCGUggGGCCcACGGuga-GGg -3' miRNA: 3'- -CGCGCCAGCGggUCGG-UGCCugggCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 13995 | 0.66 | 0.587564 |
Target: 5'- gGCaGCGGUauuaaCCCGGgUGCGGGCCCa- -3' miRNA: 3'- -CG-CGCCAgc---GGGUCgGUGCCUGGGcc -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 128966 | 0.66 | 0.587564 |
Target: 5'- cGCGCGGUCGUggGGCCcACGGuga-GGg -3' miRNA: 3'- -CGCGCCAGCGggUCGG-UGCCugggCC- -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 129550 | 0.66 | 0.587564 |
Target: 5'- gGCaGCGGUauuaaCCCGGgUGCGGGCCCa- -3' miRNA: 3'- -CG-CGCCAgc---GGGUCgGUGCCUGGGcc -5' |
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3120 | 3' | -63.5 | NC_001493.1 | + | 94348 | 0.66 | 0.587564 |
Target: 5'- cGCGUGGUaCGaCC--UCACGGcCCCGGg -3' miRNA: 3'- -CGCGCCA-GCgGGucGGUGCCuGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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