miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3120 3' -63.5 NC_001493.1 + 61422 0.66 0.55895
Target:  5'- gGCGCuucuugGGUUGCUUugguuucuucggGGUUACGGGCUCGGg -3'
miRNA:   3'- -CGCG------CCAGCGGG------------UCGGUGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 18060 0.67 0.512225
Target:  5'- cGgGCGGUCGgg-GGCCugGGugCCGc -3'
miRNA:   3'- -CgCGCCAGCgggUCGGugCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 133615 0.67 0.512225
Target:  5'- cGgGCGGUCGgg-GGCCugGGugCCGc -3'
miRNA:   3'- -CgCGCCAGCgggUCGGugCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 32634 0.67 0.521451
Target:  5'- cGCGCGuGcCGauCCCGGUCGCGGACUa-- -3'
miRNA:   3'- -CGCGC-CaGC--GGGUCGGUGCCUGGgcc -5'
3120 3' -63.5 NC_001493.1 + 62487 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62529 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62571 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62613 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62655 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 102056 0.67 0.503067
Target:  5'- cCGCGaGcgCGCUcauCAGCCACGcGACCCuGGc -3'
miRNA:   3'- cGCGC-Ca-GCGG---GUCGGUGC-CUGGG-CC- -5'
3120 3' -63.5 NC_001493.1 + 83881 0.68 0.449753
Target:  5'- cCGUGuUCGUCCGGCgCGCGGcgcucCCCGGu -3'
miRNA:   3'- cGCGCcAGCGGGUCG-GUGCCu----GGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62942 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62832 0.73 0.227314
Target:  5'- uCGCcGUCGCgaCGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGcCAGCGg-GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 61247 0.73 0.232596
Target:  5'- aGCGCGGguaCCCAGgauCCAUGGACCCaGGc -3'
miRNA:   3'- -CGCGCCagcGGGUC---GGUGCCUGGG-CC- -5'
3120 3' -63.5 NC_001493.1 + 10362 0.7 0.383826
Target:  5'- cCGUGuccCGCUCAGUCACGGACUCGa -3'
miRNA:   3'- cGCGCca-GCGGGUCGGUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 125916 0.7 0.383826
Target:  5'- cCGUGuccCGCUCAGUCACGGACUCGa -3'
miRNA:   3'- cGCGCca-GCGGGUCGGUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 106600 0.69 0.399702
Target:  5'- aGCccaGGUCGCCCaguuuAGCCACGaGucgccCCCGGu -3'
miRNA:   3'- -CGcg-CCAGCGGG-----UCGGUGC-Cu----GGGCC- -5'
3120 3' -63.5 NC_001493.1 + 103764 0.69 0.427633
Target:  5'- uGCGCGG-CGaagccggaggagagaCCCuGGUCACGGACCUGc -3'
miRNA:   3'- -CGCGCCaGC---------------GGG-UCGGUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 62697 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62781 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.