miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3120 3' -63.5 NC_001493.1 + 113267 1.1 0.00054
Target:  5'- cGCGCGGUCGCCCAGCCACGGACCCGGc -3'
miRNA:   3'- -CGCGCCAGCGGGUCGGUGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 103736 0.75 0.188631
Target:  5'- gGCGCGuucCGaCCCc-CCACGGACCCGGg -3'
miRNA:   3'- -CGCGCca-GC-GGGucGGUGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62832 0.73 0.227314
Target:  5'- uCGCcGUCGCgaCGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGcCAGCGg-GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 61247 0.73 0.232596
Target:  5'- aGCGCGGguaCCCAGgauCCAUGGACCCaGGc -3'
miRNA:   3'- -CGCGCCagcGGGUC---GGUGCCUGGG-CC- -5'
3120 3' -63.5 NC_001493.1 + 26395 0.72 0.291226
Target:  5'- uCG-GGUCGaCCCAG--ACGGGCCCGGg -3'
miRNA:   3'- cGCgCCAGC-GGGUCggUGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 87291 0.71 0.338773
Target:  5'- cGCGCGcGcC-CCCGGUUGCGGACCUGa -3'
miRNA:   3'- -CGCGC-CaGcGGGUCGGUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 62625 0.7 0.353354
Target:  5'- cCGCGGgag-CCGGCCACGGGCaCGGg -3'
miRNA:   3'- cGCGCCagcgGGUCGGUGCCUGgGCC- -5'
3120 3' -63.5 NC_001493.1 + 131752 0.7 0.36081
Target:  5'- gGUGaccaGGUCGCuCCAGUCAUGGACgCCc- -3'
miRNA:   3'- -CGCg---CCAGCG-GGUCGGUGCCUG-GGcc -5'
3120 3' -63.5 NC_001493.1 + 16198 0.7 0.36081
Target:  5'- gGUGaccaGGUCGCuCCAGUCAUGGACgCCc- -3'
miRNA:   3'- -CGCg---CCAGCG-GGUCGGUGCCUG-GGcc -5'
3120 3' -63.5 NC_001493.1 + 10362 0.7 0.383826
Target:  5'- cCGUGuccCGCUCAGUCACGGACUCGa -3'
miRNA:   3'- cGCGCca-GCGGGUCGGUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 125916 0.7 0.383826
Target:  5'- cCGUGuccCGCUCAGUCACGGACUCGa -3'
miRNA:   3'- cGCGCca-GCGGGUCGGUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 106600 0.69 0.399702
Target:  5'- aGCccaGGUCGCCCaguuuAGCCACGaGucgccCCCGGu -3'
miRNA:   3'- -CGcg-CCAGCGGG-----UCGGUGC-Cu----GGGCC- -5'
3120 3' -63.5 NC_001493.1 + 103764 0.69 0.427633
Target:  5'- uGCGCGG-CGaagccggaggagagaCCCuGGUCACGGACCUGc -3'
miRNA:   3'- -CGCGCCaGC---------------GGG-UCGGUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 62781 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62697 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62942 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 124834 0.68 0.449753
Target:  5'- aGCGCGGUCGCggggaugaccCCGcggcucccguuGaCCGCGcaaaaGACCCGGg -3'
miRNA:   3'- -CGCGCCAGCG----------GGU-----------C-GGUGC-----CUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 9280 0.68 0.449753
Target:  5'- aGCGCGGUCGCggggaugaccCCGcggcucccguuGaCCGCGcaaaaGACCCGGg -3'
miRNA:   3'- -CGCGCCAGCG----------GGU-----------C-GGUGC-----CUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 83881 0.68 0.449753
Target:  5'- cCGUGuUCGUCCGGCgCGCGGcgcucCCCGGu -3'
miRNA:   3'- cGCGCcAGCGGGUCG-GUGCCu----GGGCC- -5'
3120 3' -63.5 NC_001493.1 + 69473 0.68 0.479602
Target:  5'- -aGCGGgugcacuguacgggCGCgCCAGCCuCGGACUCGc -3'
miRNA:   3'- cgCGCCa-------------GCG-GGUCGGuGCCUGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.