miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3120 3' -63.5 NC_001493.1 + 9280 0.68 0.449753
Target:  5'- aGCGCGGUCGCggggaugaccCCGcggcucccguuGaCCGCGcaaaaGACCCGGg -3'
miRNA:   3'- -CGCGCCAGCG----------GGU-----------C-GGUGC-----CUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 10362 0.7 0.383826
Target:  5'- cCGUGuccCGCUCAGUCACGGACUCGa -3'
miRNA:   3'- cGCGCca-GCGGGUCGGUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 13412 0.66 0.587564
Target:  5'- cGCGCGGUCGUggGGCCcACGGuga-GGg -3'
miRNA:   3'- -CGCGCCAGCGggUCGG-UGCCugggCC- -5'
3120 3' -63.5 NC_001493.1 + 13995 0.66 0.587564
Target:  5'- gGCaGCGGUauuaaCCCGGgUGCGGGCCCa- -3'
miRNA:   3'- -CG-CGCCAgc---GGGUCgGUGCCUGGGcc -5'
3120 3' -63.5 NC_001493.1 + 16198 0.7 0.36081
Target:  5'- gGUGaccaGGUCGCuCCAGUCAUGGACgCCc- -3'
miRNA:   3'- -CGCg---CCAGCG-GGUCGGUGCCUG-GGcc -5'
3120 3' -63.5 NC_001493.1 + 18060 0.67 0.512225
Target:  5'- cGgGCGGUCGgg-GGCCugGGugCCGc -3'
miRNA:   3'- -CgCGCCAGCgggUCGGugCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 26395 0.72 0.291226
Target:  5'- uCG-GGUCGaCCCAG--ACGGGCCCGGg -3'
miRNA:   3'- cGCgCCAGC-GGGUCggUGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 29294 0.66 0.57799
Target:  5'- aCGCGGggGCaCGGCC-CGGACCaaaaaGGa -3'
miRNA:   3'- cGCGCCagCGgGUCGGuGCCUGGg----CC- -5'
3120 3' -63.5 NC_001493.1 + 29385 0.66 0.587564
Target:  5'- cCGCGGgCGCUCGgacuGUCGCGGACCa-- -3'
miRNA:   3'- cGCGCCaGCGGGU----CGGUGCCUGGgcc -5'
3120 3' -63.5 NC_001493.1 + 29506 0.66 0.56845
Target:  5'- ----cGUUGCuCCAGCuCGCGGACCCuGGc -3'
miRNA:   3'- cgcgcCAGCG-GGUCG-GUGCCUGGG-CC- -5'
3120 3' -63.5 NC_001493.1 + 32634 0.67 0.521451
Target:  5'- cGCGCGuGcCGauCCCGGUCGCGGACUa-- -3'
miRNA:   3'- -CGCGC-CaGC--GGGUCGGUGCCUGGgcc -5'
3120 3' -63.5 NC_001493.1 + 36229 0.66 0.597167
Target:  5'- uGCGCGGgggUGCUCAGUggggcggguugCGCGGACgaUUGGg -3'
miRNA:   3'- -CGCGCCa--GCGGGUCG-----------GUGCCUG--GGCC- -5'
3120 3' -63.5 NC_001493.1 + 36888 0.67 0.503067
Target:  5'- cCGCaGUCGUUCGGCCaggguuACGGACCgGa -3'
miRNA:   3'- cGCGcCAGCGGGUCGG------UGCCUGGgCc -5'
3120 3' -63.5 NC_001493.1 + 40657 0.66 0.57799
Target:  5'- cGUGCuacgCGUCCacGGCU-CGGACCCGGg -3'
miRNA:   3'- -CGCGcca-GCGGG--UCGGuGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 42102 0.67 0.549495
Target:  5'- aGUGCGGcgccguggacUCGCCCGGCUcgguCGuGACCaUGGc -3'
miRNA:   3'- -CGCGCC----------AGCGGGUCGGu---GC-CUGG-GCC- -5'
3120 3' -63.5 NC_001493.1 + 61247 0.73 0.232596
Target:  5'- aGCGCGGguaCCCAGgauCCAUGGACCCaGGc -3'
miRNA:   3'- -CGCGCCagcGGGUC---GGUGCCUGGG-CC- -5'
3120 3' -63.5 NC_001493.1 + 61422 0.66 0.55895
Target:  5'- gGCGCuucuugGGUUGCUUugguuucuucggGGUUACGGGCUCGGg -3'
miRNA:   3'- -CGCG------CCAGCGGG------------UCGGUGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 61476 0.66 0.56845
Target:  5'- cGCGCGGcUGUUCGGCCGgGGugUCc- -3'
miRNA:   3'- -CGCGCCaGCGGGUCGGUgCCugGGcc -5'
3120 3' -63.5 NC_001493.1 + 62487 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62529 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.