miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3120 5' -57.5 NC_001493.1 + 5642 0.66 0.860855
Target:  5'- -gCC-GGGUUCAcCGGGGAGGAgACcaGGg -3'
miRNA:   3'- agGGuUCCAGGU-GUCCCUCCUgUG--CC- -5'
3120 5' -57.5 NC_001493.1 + 29664 0.66 0.860855
Target:  5'- -gCCAGGGUCCGCGagcuGGAGca-ACGGg -3'
miRNA:   3'- agGGUUCCAGGUGUc---CCUCcugUGCC- -5'
3120 5' -57.5 NC_001493.1 + 121197 0.66 0.860855
Target:  5'- -gCC-GGGUUCAcCGGGGAGGAgACcaGGg -3'
miRNA:   3'- agGGuUCCAGGU-GUCCCUCCUgUG--CC- -5'
3120 5' -57.5 NC_001493.1 + 17458 0.66 0.8601
Target:  5'- gUCgAGGGUcCCACGGGccuugauaaccuuGAGGACGUGGg -3'
miRNA:   3'- aGGgUUCCA-GGUGUCC-------------CUCCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 133012 0.66 0.8601
Target:  5'- gUCgAGGGUcCCACGGGccuugauaaccuuGAGGACGUGGg -3'
miRNA:   3'- aGGgUUCCA-GGUGUCC-------------CUCCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 58600 0.66 0.853211
Target:  5'- gUCUCcGGGuuUCCGggagaGGGuGAGGACAUGGg -3'
miRNA:   3'- -AGGGuUCC--AGGUg----UCC-CUCCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 31841 0.66 0.840575
Target:  5'- cUCCCGAGGggagACGGGGAcgaugaggugccgguGGuCGCGGu -3'
miRNA:   3'- -AGGGUUCCagg-UGUCCCU---------------CCuGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 126479 0.66 0.837342
Target:  5'- cUCgCCGAGGUCUACAGGGcgcuCACu- -3'
miRNA:   3'- -AG-GGUUCCAGGUGUCCCuccuGUGcc -5'
3120 5' -57.5 NC_001493.1 + 11423 0.66 0.837342
Target:  5'- gUCCGGcGGUCgcgcuCACAGGGAGuaaucGAUGCGGa -3'
miRNA:   3'- aGGGUU-CCAG-----GUGUCCCUC-----CUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 126977 0.66 0.837342
Target:  5'- gUCCGGcGGUCgcgcuCACAGGGAGuaaucGAUGCGGa -3'
miRNA:   3'- aGGGUU-CCAG-----GUGUCCCUC-----CUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 10925 0.66 0.837342
Target:  5'- cUCgCCGAGGUCUACAGGGcgcuCACu- -3'
miRNA:   3'- -AG-GGUUCCAGGUGUCCCuccuGUGcc -5'
3120 5' -57.5 NC_001493.1 + 30564 0.66 0.82913
Target:  5'- gCCC-GGGUCCA-AGGG-GGACAuCGa -3'
miRNA:   3'- aGGGuUCCAGGUgUCCCuCCUGU-GCc -5'
3120 5' -57.5 NC_001493.1 + 83339 0.66 0.82913
Target:  5'- gCUCGAGGUU----GGGAGGGCGuCGGg -3'
miRNA:   3'- aGGGUUCCAGguguCCCUCCUGU-GCC- -5'
3120 5' -57.5 NC_001493.1 + 87999 0.66 0.820744
Target:  5'- -aCCGAGGUCUGgAGGaGAucagcgGGugGCGGu -3'
miRNA:   3'- agGGUUCCAGGUgUCC-CU------CCugUGCC- -5'
3120 5' -57.5 NC_001493.1 + 30495 0.66 0.820744
Target:  5'- aCUCGGGGcCCugGucGGGGGGAU-CGGg -3'
miRNA:   3'- aGGGUUCCaGGugU--CCCUCCUGuGCC- -5'
3120 5' -57.5 NC_001493.1 + 93091 0.67 0.815631
Target:  5'- aCCCAGGGcCCcgaucacuaucguacGCAGGGcGGGACuCGu -3'
miRNA:   3'- aGGGUUCCaGG---------------UGUCCC-UCCUGuGCc -5'
3120 5' -57.5 NC_001493.1 + 94682 0.67 0.81219
Target:  5'- aUCCCGGGGaCCcgugcgccagaaACGGcccugcGGGGGACACGa -3'
miRNA:   3'- -AGGGUUCCaGG------------UGUC------CCUCCUGUGCc -5'
3120 5' -57.5 NC_001493.1 + 9145 0.67 0.81219
Target:  5'- cUCCCGGGGauggCgGCgAGGGGGGAgGCc- -3'
miRNA:   3'- -AGGGUUCCa---GgUG-UCCCUCCUgUGcc -5'
3120 5' -57.5 NC_001493.1 + 44245 0.67 0.81219
Target:  5'- aCCCGAuGGaucgcgCCGuauCGGGGGGGAUACcGGg -3'
miRNA:   3'- aGGGUU-CCa-----GGU---GUCCCUCCUGUG-CC- -5'
3120 5' -57.5 NC_001493.1 + 102759 0.67 0.81219
Target:  5'- uUCCCcGGGUUaGCuGGuGGGGGCAuCGGu -3'
miRNA:   3'- -AGGGuUCCAGgUGuCC-CUCCUGU-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.