miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31203 3' -63.7 NC_006560.1 + 32432 0.66 0.582648
Target:  5'- aGGgggCCGGgGGGCCgGGgcucccccacggggcCGGGGGCUg -3'
miRNA:   3'- -CCagaGGUCgUCCGGgCC---------------GCUCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 47859 0.66 0.578781
Target:  5'- gGGUCcggCGGCGGGCCgGGgGucGGGGUc -3'
miRNA:   3'- -CCAGag-GUCGUCCGGgCCgC--UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 27449 0.66 0.578781
Target:  5'- cGUcCUCCcGCGGcGCCCGagaGCGcGGGCa -3'
miRNA:   3'- cCA-GAGGuCGUC-CGGGC---CGCuCCCGa -5'
31203 3' -63.7 NC_006560.1 + 2916 0.66 0.578781
Target:  5'- cGGUC-CaGGCGGGCggGGCGGGGGa- -3'
miRNA:   3'- -CCAGaGgUCGUCCGggCCGCUCCCga -5'
31203 3' -63.7 NC_006560.1 + 109722 0.66 0.578781
Target:  5'- ----cCCGGCGuauaugagcGGCCgGGCGGGGGUc -3'
miRNA:   3'- ccagaGGUCGU---------CCGGgCCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 72353 0.66 0.578781
Target:  5'- gGGUgUggGGCGcGGCCCucGCGGGGGCg -3'
miRNA:   3'- -CCAgAggUCGU-CCGGGc-CGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 24094 0.66 0.578781
Target:  5'- ----cCCGGCGGGCCCGacccccGCGGcGGCUg -3'
miRNA:   3'- ccagaGGUCGUCCGGGC------CGCUcCCGA- -5'
31203 3' -63.7 NC_006560.1 + 26089 0.66 0.578781
Target:  5'- cGGg---CGGCccGGCgCGGCGGGGGCUu -3'
miRNA:   3'- -CCagagGUCGu-CCGgGCCGCUCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 135009 0.66 0.578781
Target:  5'- ---gUCCAGCagcgAGGCCCGG--AGGGCc -3'
miRNA:   3'- ccagAGGUCG----UCCGGGCCgcUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 82771 0.66 0.578781
Target:  5'- aGGUCgggggcCCGGC--GCCCGcGCGcGGGCg -3'
miRNA:   3'- -CCAGa-----GGUCGucCGGGC-CGCuCCCGa -5'
31203 3' -63.7 NC_006560.1 + 99274 0.66 0.578781
Target:  5'- cGG-CUgCGGguGGgCCGGCGgcuGGGGUc -3'
miRNA:   3'- -CCaGAgGUCguCCgGGCCGC---UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 139336 0.66 0.578781
Target:  5'- cGGgcgCcUCGGC-GGCCCGcGCGGGGGg- -3'
miRNA:   3'- -CCa--GaGGUCGuCCGGGC-CGCUCCCga -5'
31203 3' -63.7 NC_006560.1 + 35169 0.66 0.578781
Target:  5'- ----cCCGGCcgccGGGCCCGGggccccgcccCGGGGGCg -3'
miRNA:   3'- ccagaGGUCG----UCCGGGCC----------GCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 39896 0.66 0.577815
Target:  5'- gGGUCUCCGucguuCGGGCCgGGgugcgcuCGGGuGGCUg -3'
miRNA:   3'- -CCAGAGGUc----GUCCGGgCC-------GCUC-CCGA- -5'
31203 3' -63.7 NC_006560.1 + 112407 0.66 0.569139
Target:  5'- gGGcCcCCGGgccccccccgcCGGGCCCGGCGuGGuGCa -3'
miRNA:   3'- -CCaGaGGUC-----------GUCCGGGCCGCuCC-CGa -5'
31203 3' -63.7 NC_006560.1 + 65941 0.66 0.569139
Target:  5'- aGGUCcggccgCCAGCGGuaCaGGCGGGcGGCg -3'
miRNA:   3'- -CCAGa-----GGUCGUCcgGgCCGCUC-CCGa -5'
31203 3' -63.7 NC_006560.1 + 13998 0.66 0.566254
Target:  5'- cGGUCgguuuauuguucgaUCCga-GGGCCCGGCGgacGGGGUc -3'
miRNA:   3'- -CCAG--------------AGGucgUCCGGGCCGC---UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 132313 0.66 0.559537
Target:  5'- -aUC-CCAGC-GGCgCGGCcGGGGCg -3'
miRNA:   3'- ccAGaGGUCGuCCGgGCCGcUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 103094 0.66 0.559537
Target:  5'- cGGUC-CCGcccccGCGGaCCCGGCGgcggacgcgGGGGCg -3'
miRNA:   3'- -CCAGaGGU-----CGUCcGGGCCGC---------UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 32326 0.66 0.559537
Target:  5'- aGGgga-CAG-AGGCCCGGCcaGGGGGCc -3'
miRNA:   3'- -CCagagGUCgUCCGGGCCG--CUCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.