miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31203 5' -58 NC_006560.1 + 50470 0.66 0.824475
Target:  5'- gAGGGUCGCCU-GCCGcgggaggAGGCUCUGGc -3'
miRNA:   3'- -UUUCGGUGGAgCGGCa------UCUGGGACCu -5'
31203 5' -58 NC_006560.1 + 120329 0.66 0.824475
Target:  5'- -cGGCCGCCgUCGCCG-AGGcgugcCCCUGc- -3'
miRNA:   3'- uuUCGGUGG-AGCGGCaUCU-----GGGACcu -5'
31203 5' -58 NC_006560.1 + 90582 0.66 0.815904
Target:  5'- cGAGCCGCCgacggacgUCGCCGccuGGCCCaugcUGGc -3'
miRNA:   3'- uUUCGGUGG--------AGCGGCau-CUGGG----ACCu -5'
31203 5' -58 NC_006560.1 + 75207 0.66 0.807166
Target:  5'- gGAGGCCGCCgcgcgcgcggUCGCCG-AGGCgcgcgcgggCCUGGc -3'
miRNA:   3'- -UUUCGGUGG----------AGCGGCaUCUG---------GGACCu -5'
31203 5' -58 NC_006560.1 + 144861 0.66 0.807166
Target:  5'- gGGGGCUGCC-CGCCGcccgcguGGCCCUGa- -3'
miRNA:   3'- -UUUCGGUGGaGCGGCau-----CUGGGACcu -5'
31203 5' -58 NC_006560.1 + 115366 0.66 0.807166
Target:  5'- gAGGGCCcguccaccgACCUgCGCCucgAGuCCCUGGAc -3'
miRNA:   3'- -UUUCGG---------UGGA-GCGGca-UCuGGGACCU- -5'
31203 5' -58 NC_006560.1 + 90305 0.66 0.807166
Target:  5'- uGGGGCC-CgUCGCCGUGGcGCUCcGGGc -3'
miRNA:   3'- -UUUCGGuGgAGCGGCAUC-UGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 53845 0.66 0.806283
Target:  5'- cGGGCCggccggcacccgcGCCUCGCCGac-GCCCcGGAc -3'
miRNA:   3'- uUUCGG-------------UGGAGCGGCaucUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 130402 0.66 0.789223
Target:  5'- --cGCgAgCgCGCUGgcGGCCCUGGAg -3'
miRNA:   3'- uuuCGgUgGaGCGGCauCUGGGACCU- -5'
31203 5' -58 NC_006560.1 + 131076 0.66 0.780036
Target:  5'- --cGCCGCCgugccCGCCGc-GGCCCUGa- -3'
miRNA:   3'- uuuCGGUGGa----GCGGCauCUGGGACcu -5'
31203 5' -58 NC_006560.1 + 70461 0.67 0.770716
Target:  5'- cGGGCCGCgaUCGCCG-AGGCCauggcccacCUGGGg -3'
miRNA:   3'- uUUCGGUGg-AGCGGCaUCUGG---------GACCU- -5'
31203 5' -58 NC_006560.1 + 44771 0.67 0.770716
Target:  5'- --cGUgGCCaUCGCCGagcGGGCUCUGGGg -3'
miRNA:   3'- uuuCGgUGG-AGCGGCa--UCUGGGACCU- -5'
31203 5' -58 NC_006560.1 + 77601 0.67 0.770716
Target:  5'- -cGGCCGCCgaGCUGUAcgccGCCCUGGu -3'
miRNA:   3'- uuUCGGUGGagCGGCAUc---UGGGACCu -5'
31203 5' -58 NC_006560.1 + 92358 0.67 0.765065
Target:  5'- -cGGCCGCCgccuggucucugcgCGgCGgcgcGGCCCUGGAg -3'
miRNA:   3'- uuUCGGUGGa-------------GCgGCau--CUGGGACCU- -5'
31203 5' -58 NC_006560.1 + 10468 0.67 0.761274
Target:  5'- gGGGGCCACgC-CGCCucgGGGCCCgGGGc -3'
miRNA:   3'- -UUUCGGUG-GaGCGGca-UCUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 86188 0.67 0.751717
Target:  5'- -cAGCC-CCUCgGCCGUgAGGCCgCgGGAc -3'
miRNA:   3'- uuUCGGuGGAG-CGGCA-UCUGG-GaCCU- -5'
31203 5' -58 NC_006560.1 + 117958 0.67 0.751717
Target:  5'- --cGCCACUUCuGCCGguacguguGGCgCCUGGGc -3'
miRNA:   3'- uuuCGGUGGAG-CGGCau------CUG-GGACCU- -5'
31203 5' -58 NC_006560.1 + 25186 0.67 0.751717
Target:  5'- -cGGCCGCgCgCGCCGggcccgAGGCCCUGc- -3'
miRNA:   3'- uuUCGGUG-GaGCGGCa-----UCUGGGACcu -5'
31203 5' -58 NC_006560.1 + 74683 0.67 0.751717
Target:  5'- --cGCCGCCcugcgCGCCGaccucuggGGGCuCCUGGGc -3'
miRNA:   3'- uuuCGGUGGa----GCGGCa-------UCUG-GGACCU- -5'
31203 5' -58 NC_006560.1 + 54680 0.67 0.742055
Target:  5'- -cAGCCGCCggccgCGCCcucGUAGuCCgUGGGg -3'
miRNA:   3'- uuUCGGUGGa----GCGG---CAUCuGGgACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.