miRNA display CGI


Results 1 - 20 of 291 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31213 3' -60 NC_006560.1 + 150490 0.68 0.679365
Target:  5'- uCCcgGCCCCGCccCGCGgucccGGcccCGCCGg -3'
miRNA:   3'- -GGuaCGGGGUGcuGCGCa----CCu--GCGGC- -5'
31213 3' -60 NC_006560.1 + 149756 0.73 0.368102
Target:  5'- aCCGacCCCCGgGGCGCGgGGGCGUCGa -3'
miRNA:   3'- -GGUacGGGGUgCUGCGCaCCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 149133 0.69 0.610782
Target:  5'- aCCAUugGCUCCgccGCGGCGCG-GGGCgGCCc -3'
miRNA:   3'- -GGUA--CGGGG---UGCUGCGCaCCUG-CGGc -5'
31213 3' -60 NC_006560.1 + 148947 0.67 0.746173
Target:  5'- gCAUcCCCCgACGGgGCG-GGACGCgGu -3'
miRNA:   3'- gGUAcGGGG-UGCUgCGCaCCUGCGgC- -5'
31213 3' -60 NC_006560.1 + 148642 0.72 0.424962
Target:  5'- gCggGCCCCGCcggccggaGACGCGgcccaaauacgGGGCGCCGu -3'
miRNA:   3'- gGuaCGGGGUG--------CUGCGCa----------CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 147199 0.67 0.73684
Target:  5'- cCCuc-CCCCGCcggaGGCGCG-GGGgGCCGg -3'
miRNA:   3'- -GGuacGGGGUG----CUGCGCaCCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 147146 0.68 0.640225
Target:  5'- ---cGCgCCGCGGCGCcgccucgGGGCGCCu -3'
miRNA:   3'- gguaCGgGGUGCUGCGca-----CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 146840 0.68 0.679365
Target:  5'- gCGUGCUgCgGCGGCGCGgggcgGGGCGgCGc -3'
miRNA:   3'- gGUACGG-GgUGCUGCGCa----CCUGCgGC- -5'
31213 3' -60 NC_006560.1 + 146342 0.67 0.71793
Target:  5'- cCUcgGCCCCcgcuCGGCGgGgcGGGgGCCGa -3'
miRNA:   3'- -GGuaCGGGGu---GCUGCgCa-CCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 145822 0.7 0.552459
Target:  5'- gCCcgGCCUCgcGCGGCGgGccggGGGCGCCc -3'
miRNA:   3'- -GGuaCGGGG--UGCUGCgCa---CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 145540 0.68 0.659836
Target:  5'- ---cGCCCU-CGGCGCcggGGACGCCc -3'
miRNA:   3'- gguaCGGGGuGCUGCGca-CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 144334 0.66 0.791296
Target:  5'- uCCGcgGCCCCGCcgcgGGCGCGa-GACgGCCGc -3'
miRNA:   3'- -GGUa-CGGGGUG----CUGCGCacCUG-CGGC- -5'
31213 3' -60 NC_006560.1 + 142538 0.73 0.368102
Target:  5'- cCCggGCCCgGCGgccggGCGCGUcGGACGCgGg -3'
miRNA:   3'- -GGuaCGGGgUGC-----UGCGCA-CCUGCGgC- -5'
31213 3' -60 NC_006560.1 + 142426 0.67 0.70837
Target:  5'- cCCggGCCCCGCcgcccGGCGCGgcGGcCGCgCGg -3'
miRNA:   3'- -GGuaCGGGGUG-----CUGCGCa-CCuGCG-GC- -5'
31213 3' -60 NC_006560.1 + 142344 0.75 0.29637
Target:  5'- gCCggGCCCCGCG-CGCGccucGGGgGCCGg -3'
miRNA:   3'- -GGuaCGGGGUGCuGCGCa---CCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 140351 0.67 0.727423
Target:  5'- aCA-GCCCCGCGG-GCGUcGGCGCgGc -3'
miRNA:   3'- gGUaCGGGGUGCUgCGCAcCUGCGgC- -5'
31213 3' -60 NC_006560.1 + 139384 0.66 0.799956
Target:  5'- cCCAc-CCCCAgGAgGCGaGGACGgCGa -3'
miRNA:   3'- -GGUacGGGGUgCUgCGCaCCUGCgGC- -5'
31213 3' -60 NC_006560.1 + 139303 0.66 0.764555
Target:  5'- -gGUGCCCCguggGCGccucggGCGCGggagaggcGGGCGCCu -3'
miRNA:   3'- ggUACGGGG----UGC------UGCGCa-------CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 138980 0.68 0.679365
Target:  5'- gUCGcGCaCCCGCGuCGCGUcGGGcCGCUGg -3'
miRNA:   3'- -GGUaCG-GGGUGCuGCGCA-CCU-GCGGC- -5'
31213 3' -60 NC_006560.1 + 138488 0.66 0.799096
Target:  5'- gCA-GCCCCcccgaggGCGAgGcCG-GGGCGCCGc -3'
miRNA:   3'- gGUaCGGGG-------UGCUgC-GCaCCUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.