miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31214 5' -61.3 NC_006560.1 + 8930 0.66 0.726887
Target:  5'- cGGGGCGCGGggggcuuuuaugcgCCGcgggGCGCCGaCGUCa-- -3'
miRNA:   3'- -CCUCGUGCCa-------------GGC----UGCGGC-GCGGagu -5'
31214 5' -61.3 NC_006560.1 + 27421 0.66 0.694407
Target:  5'- --cGCGCGGgccUCCGGCGuuucgcguCCGCGuCCUCc -3'
miRNA:   3'- ccuCGUGCC---AGGCUGC--------GGCGC-GGAGu -5'
31214 5' -61.3 NC_006560.1 + 1220 0.66 0.694407
Target:  5'- gGGGGCGgGG-CCccUGCCGCGCCc-- -3'
miRNA:   3'- -CCUCGUgCCaGGcuGCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 130422 0.66 0.684735
Target:  5'- uGGAGCGCGaGgUgGGCGgCGCGCCc-- -3'
miRNA:   3'- -CCUCGUGC-CaGgCUGCgGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 70587 0.66 0.684735
Target:  5'- gGGGGCA---UCC-ACGcCCGCGCCUCc -3'
miRNA:   3'- -CCUCGUgccAGGcUGC-GGCGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 137019 0.66 0.675024
Target:  5'- uGGAGUucgccuacCGGUUCc-UGUCGCGCCUCAu -3'
miRNA:   3'- -CCUCGu-------GCCAGGcuGCGGCGCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 88679 0.66 0.684735
Target:  5'- -cGGCGCGGgCUGcGCGCCGCgGCCg-- -3'
miRNA:   3'- ccUCGUGCCaGGC-UGCGGCG-CGGagu -5'
31214 5' -61.3 NC_006560.1 + 74628 0.66 0.684735
Target:  5'- cGGGCG-GGUggaccugccugcCCGACGCCGCGCa--- -3'
miRNA:   3'- cCUCGUgCCA------------GGCUGCGGCGCGgagu -5'
31214 5' -61.3 NC_006560.1 + 2268 0.66 0.694407
Target:  5'- -aGGCGCGGUgCGA-G-UGCGCCUCGc -3'
miRNA:   3'- ccUCGUGCCAgGCUgCgGCGCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 57878 0.66 0.684735
Target:  5'- cGGGGCcccccGCGGgucuUCCGcguccacCGCCGCGCC-CGg -3'
miRNA:   3'- -CCUCG-----UGCC----AGGCu------GCGGCGCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 39642 0.66 0.674051
Target:  5'- cGGGCGCGGcggagucUCCGcucgggccGCgGCCGCGCCcCGg -3'
miRNA:   3'- cCUCGUGCC-------AGGC--------UG-CGGCGCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 110298 0.66 0.674051
Target:  5'- gGGGGCGCGGcCCucgucgcccuguuGGCgGCCGCGCa--- -3'
miRNA:   3'- -CCUCGUGCCaGG-------------CUG-CGGCGCGgagu -5'
31214 5' -61.3 NC_006560.1 + 99617 0.66 0.675024
Target:  5'- gGGGGCggcugGCGGUCCGcgGCGaUgGCGCCg-- -3'
miRNA:   3'- -CCUCG-----UGCCAGGC--UGC-GgCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 96939 0.66 0.684735
Target:  5'- cGAGCGCGaccUCuCGAcgggcCGCCGCGCCg-- -3'
miRNA:   3'- cCUCGUGCc--AG-GCU-----GCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 83710 0.66 0.684735
Target:  5'- --uGCGCGGUucgCCGGCGCCGgGgCC-CGu -3'
miRNA:   3'- ccuCGUGCCA---GGCUGCGGCgC-GGaGU- -5'
31214 5' -61.3 NC_006560.1 + 57334 0.66 0.684735
Target:  5'- cGGuGCGCGGggcaggCCGcgGCGaaGCGgCCUCGg -3'
miRNA:   3'- -CCuCGUGCCa-----GGC--UGCggCGC-GGAGU- -5'
31214 5' -61.3 NC_006560.1 + 64773 0.66 0.694407
Target:  5'- cGGAGgcgaaggucCGCGGcCCGGCGCUccgcuccccCGCCUCGc -3'
miRNA:   3'- -CCUC---------GUGCCaGGCUGCGGc--------GCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 74736 0.66 0.694407
Target:  5'- uGGAGCACccgacccCCGACacggcgGCCGCGCuCUCc -3'
miRNA:   3'- -CCUCGUGcca----GGCUG------CGGCGCG-GAGu -5'
31214 5' -61.3 NC_006560.1 + 24816 0.66 0.684735
Target:  5'- --cGCGCGcGaCCuGCGCCGCGCCg-- -3'
miRNA:   3'- ccuCGUGC-CaGGcUGCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 142735 0.66 0.675024
Target:  5'- gGGGGCccgGCGGagcCCGGCGCcCGgGCCcCGg -3'
miRNA:   3'- -CCUCG---UGCCa--GGCUGCG-GCgCGGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.